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Protein

SAGA-associated factor 11

Gene

OsJ_18181

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Keywords - Molecular functioni

ActivatorUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
SAGA-associated factor 11UniRule annotation
Gene namesi
ORF Names:OsJ_18181Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Organism-specific databases

GrameneiB9FP24.

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiB9FP24. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g28370.2.

Family & Domainsi

Sequence similaritiesi

Belongs to the SGF11 family.UniRule annotation
Contains 1 SGF11-type zinc finger.UniRule annotation

Phylogenomic databases

eggNOGiNOG271996.

Family and domain databases

InterProiIPR013246. SAGA_su_Sgf11.
[Graphical view]
PfamiPF08209. Sgf11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9FP24-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNCGRPVAAG RFAPHLEKCM GKLHFQGRKA RTKTTRSSTA GRTRNNNGSA
60 70 80 90
ASSYSPYSSP AIANRASLPN GVTDGSASVT GEDHSNHILP EP
Length:92
Mass (Da):9,667
Last modified:March 24, 2009 - v1
Checksum:iBCC3EE10FB343C80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000142 Genomic DNA. Translation: EEE63369.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000142 Genomic DNA. Translation: EEE63369.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g28370.2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GrameneiB9FP24.

Phylogenomic databases

eggNOGiNOG271996.

Gene expression databases

ExpressionAtlasiB9FP24. baseline.

Family and domain databases

InterProiIPR013246. SAGA_su_Sgf11.
[Graphical view]
PfamiPF08209. Sgf11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.

Entry informationi

Entry nameiB9FP24_ORYSJ
AccessioniPrimary (citable) accession number: B9FP24
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 7, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.