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B9EKS2 (B9EKS2_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Lysine-specific demethylase 3B Ensembl ENSMUSP00000037628
Gene names
Name:Kdm3b MGI 1923356 Ensembl ENSMUSP00000037628
Synonyms:Jmjd1b EMBL AAI51085.1
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAI51085.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length1762 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains JmjC domain. SAAS SAAS003347

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: Ensembl

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9EKS2 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: EB0D535476236CDF

FASTA1,762191,460
        10         20         30         40         50         60 
MADAAASPVG KRLLLLFADP TASASASAPT AAAVVSGDPG PALRTRAWRA GTVRAMSGAV 

        70         80         90        100        110        120 
PQDLAIFVEF DGCNWKQHSW VKVHAEDVLA LLLEGSLVWA PRKDPVLLQG TRVPVAQWPA 

       130        140        150        160        170        180 
LTFTPLVDKL GLGSVVPVEY LVDRELRFLS DANGMHLFQM GTDVQNQILL EHAALRETVN 

       190        200        210        220        230        240 
ALISDQKLQE IFSRGPYSVQ GHRVKVYQPE GEEVWLCGVV SRQDSVTRLM EVSITETGEV 

       250        260        270        280        290        300 
KSVDPRLTHV MLMDSSTPQS EGGTIKAVKS SKGKKKRESI EGRDGRRRKS ASDSGCDPAT 

       310        320        330        340        350        360 
KKLKGDRGEV DSNGSDGGEA SRGPWKGGNA SGEPGLEQRA KQPPSTFVPQ INRNIRFATY 

       370        380        390        400        410        420 
TKENGRTLVV QDEPVGGDTP VPFTPYASAT GQTPLAPEVG GAENKEAGKT LEQVSQGMVA 

       430        440        450        460        470        480 
SAAVVTTASS TPTTVRISDT GLASGTGPEK QKGSWSQASG ENSRNSSLAS SGFGVSLSSL 

       490        500        510        520        530        540 
SQPLTFGSGR SQSNGVLATD NKPLGFSFSC SSASESQKDS DLSKNLFFQC MSQNVPSTNY 

       550        560        570        580        590        600 
LSRVSESVAD DSSSRDSFTQ SLESLTSGLC KGRSVLGADT QPGPKAGSSV DRKVPAESMP 

       610        620        630        640        650        660 
TLTPAFPRSL LNTRTPENHE NLFLQPPKLS REEPSNPFLA FVEKVEHSPF SSFVSQASGS 

       670        680        690        700        710        720 
SSSATSVTSK ATASWPESHS SAESAPLAKK KPLFITTDSS KLVSGVLGSA LSTGSPSLSA 

       730        740        750        760        770        780 
VGNGRSSSPT NSLTQPIEMP TLSSSPTEER PTVGPGQQDN PLLKTFSTVF GRHSGSFLSA 

       790        800        810        820        830        840 
PAEFAQENKA PFEAVKRFSL DERSLACRQD SDSSTNSDLS DLSDSEEQLQ AKSGLKGIPE 

       850        860        870        880        890        900 
HLMGKLGPNG ERSAELLLGK GKGKQAPKGR PRTAPLKVGQ SVLKDVSKVR KLKQSGEPFL 

       910        920        930        940        950        960 
QDGSCINVAP HLHKCRECRL ERYRKFKEQE QDDSTVACRF FHFRRLVFTR KGVLRVEGFL 

       970        980        990       1000       1010       1020 
SPQQSDPDAM NLWIPSSSLA EGIDLETSKY ILANVGDQFC QLVMSEKEAM MMVEPHQKVA 

      1030       1040       1050       1060       1070       1080 
WKRAVRGVRE MCDVCETTLF NIHWVCRKCG FGVCLDCYRL RKSRPRSETE EMGDEEVFSW 

      1090       1100       1110       1120       1130       1140 
LKCAKGQSHE PENLMPTQII PGTALYNIGD MVHAARGKWG IKANCPCISR QSKSVLRPAV 

      1150       1160       1170       1180       1190       1200 
TNGISQLPSV TPSASSGNET TFSSGGGAAA VTNPEPDQVP KGAGTDGRSE EPLKAEGSAS 

      1210       1220       1230       1240       1250       1260 
NSNSELKAIR PPCPDTAPPS SALHWLADLA TQKAKEETKD AGSLRSVLNK ESHSPFGLDS 

      1270       1280       1290       1300       1310       1320 
FNSTAKVSPL TPKLFNSLLL GPTASNSKTE GSSLRDLLHS GPGKLPQTPL DTGIPFPPVF 

      1330       1340       1350       1360       1370       1380 
SSSSAVAKSK ASLPDFLDHI IASVVENKKT SDPSKRSCNL TDTQKEVKEM AMGLNVLDPH 

      1390       1400       1410       1420       1430       1440 
TSHSWLCDGR LLCLHDPSNK NNWKIFRECW KQGQPVLVSG VHKKLKSELW KPEAFSQEFG 

      1450       1460       1470       1480       1490       1500 
DQDVDLVNCR NCAIISDVKV RDFWDGFEII CKRLRSEDGQ PMVLKLKDWP PGEDFRDMMP 

      1510       1520       1530       1540       1550       1560 
TRFEDLMENL PLPEYTKRDG RLNLASRLPS YFVRPDLGPK MYNAYGLITA EDRRVGTTNL 

      1570       1580       1590       1600       1610       1620 
HLDVSDAVNV MVYVGIPVGE GAHDEEVLKT IDEGDADEVT KQRIHDGKEK PGALWHIYAA 

      1630       1640       1650       1660       1670       1680 
KDAEKIRELL RKVGEEQGQE NPPDHDPIHD QSWYLDQILR KRLFEEYGVQ GWAIVQFLGD 

      1690       1700       1710       1720       1730       1740 
AVFIPAGAPH QVHNLYSCIK VAEDFVSPEH VKHCFRLTQE FRHLSNTHTN HEDKLQVKNI 

      1750       1760 
IYHAVKDAVG TLKAHESKLA RS 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain EMBL AAI51085.1.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000037628.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000037628.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC114820 Genomic DNA. No translation available.
AC145591 Genomic DNA. No translation available.
BC151084 mRNA. Translation: AAI51085.1.
RefSeqNP_001074725.1. NM_001081256.1.
UniGeneMm.277906.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000043775; ENSMUSP00000037628; ENSMUSG00000038773.
GeneID277250.
KEGGmmu:277250.
UCSCuc008elq.1. mouse.

Organism-specific databases

CTD51780.
MGIMGI:1923356. Kdm3b.

Phylogenomic databases

GeneTreeENSGT00530000063039.
HOGENOMHOG000007471.
HOVERGENHBG096070.
KOK15601.
OMAIICKRLR.
OrthoDBEOG7B5WVG.
TreeFamTF324723.

Gene expression databases

GenevestigatorB9EKS2.

Family and domain databases

InterProIPR003347. JmjC_dom.
[Graphical view]
PfamPF02373. JmjC. 1 hit.
[Graphical view]
SMARTSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEPS51184. JMJC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio393733.
SOURCESearch...

Entry information

Entry nameB9EKS2_MOUSE
AccessionPrimary (citable) accession number: B9EKS2
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: February 19, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)