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B9EKS2

- B9EKS2_MOUSE

UniProt

B9EKS2 - B9EKS2_MOUSE

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Protein
Submitted name:

Jumonji domain containing 1B

Gene

Kdm3b

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

ReactomeiREACT_256030. HDMs demethylate histones.

Names & Taxonomyi

Protein namesi
Submitted name:
Jumonji domain containing 1BImported
Submitted name:
Lysine-specific demethylase 3BImported
Gene namesi
Name:Kdm3bImported
Synonyms:Jmjd1bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 18

Organism-specific databases

MGIiMGI:1923356. Kdm3b.

Expressioni

Gene expression databases

GenevestigatoriB9EKS2.

Family & Domainsi

Sequence similaritiesi

Contains JmjC domain.SAAS annotation

Phylogenomic databases

GeneTreeiENSGT00530000063039.
HOGENOMiHOG000007471.
HOVERGENiHBG096070.
KOiK15601.
OMAiIICKRLR.
OrthoDBiEOG7B5WVG.
TreeFamiTF324723.

Family and domain databases

InterProiIPR003347. JmjC_dom.
[Graphical view]
PfamiPF02373. JmjC. 1 hit.
[Graphical view]
SMARTiSM00558. JmjC. 1 hit.
[Graphical view]
PROSITEiPS51184. JMJC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9EKS2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MADAAASPVG KRLLLLFADP TASASASAPT AAAVVSGDPG PALRTRAWRA
60 70 80 90 100
GTVRAMSGAV PQDLAIFVEF DGCNWKQHSW VKVHAEDVLA LLLEGSLVWA
110 120 130 140 150
PRKDPVLLQG TRVPVAQWPA LTFTPLVDKL GLGSVVPVEY LVDRELRFLS
160 170 180 190 200
DANGMHLFQM GTDVQNQILL EHAALRETVN ALISDQKLQE IFSRGPYSVQ
210 220 230 240 250
GHRVKVYQPE GEEVWLCGVV SRQDSVTRLM EVSITETGEV KSVDPRLTHV
260 270 280 290 300
MLMDSSTPQS EGGTIKAVKS SKGKKKRESI EGRDGRRRKS ASDSGCDPAT
310 320 330 340 350
KKLKGDRGEV DSNGSDGGEA SRGPWKGGNA SGEPGLEQRA KQPPSTFVPQ
360 370 380 390 400
INRNIRFATY TKENGRTLVV QDEPVGGDTP VPFTPYASAT GQTPLAPEVG
410 420 430 440 450
GAENKEAGKT LEQVSQGMVA SAAVVTTASS TPTTVRISDT GLASGTGPEK
460 470 480 490 500
QKGSWSQASG ENSRNSSLAS SGFGVSLSSL SQPLTFGSGR SQSNGVLATD
510 520 530 540 550
NKPLGFSFSC SSASESQKDS DLSKNLFFQC MSQNVPSTNY LSRVSESVAD
560 570 580 590 600
DSSSRDSFTQ SLESLTSGLC KGRSVLGADT QPGPKAGSSV DRKVPAESMP
610 620 630 640 650
TLTPAFPRSL LNTRTPENHE NLFLQPPKLS REEPSNPFLA FVEKVEHSPF
660 670 680 690 700
SSFVSQASGS SSSATSVTSK ATASWPESHS SAESAPLAKK KPLFITTDSS
710 720 730 740 750
KLVSGVLGSA LSTGSPSLSA VGNGRSSSPT NSLTQPIEMP TLSSSPTEER
760 770 780 790 800
PTVGPGQQDN PLLKTFSTVF GRHSGSFLSA PAEFAQENKA PFEAVKRFSL
810 820 830 840 850
DERSLACRQD SDSSTNSDLS DLSDSEEQLQ AKSGLKGIPE HLMGKLGPNG
860 870 880 890 900
ERSAELLLGK GKGKQAPKGR PRTAPLKVGQ SVLKDVSKVR KLKQSGEPFL
910 920 930 940 950
QDGSCINVAP HLHKCRECRL ERYRKFKEQE QDDSTVACRF FHFRRLVFTR
960 970 980 990 1000
KGVLRVEGFL SPQQSDPDAM NLWIPSSSLA EGIDLETSKY ILANVGDQFC
1010 1020 1030 1040 1050
QLVMSEKEAM MMVEPHQKVA WKRAVRGVRE MCDVCETTLF NIHWVCRKCG
1060 1070 1080 1090 1100
FGVCLDCYRL RKSRPRSETE EMGDEEVFSW LKCAKGQSHE PENLMPTQII
1110 1120 1130 1140 1150
PGTALYNIGD MVHAARGKWG IKANCPCISR QSKSVLRPAV TNGISQLPSV
1160 1170 1180 1190 1200
TPSASSGNET TFSSGGGAAA VTNPEPDQVP KGAGTDGRSE EPLKAEGSAS
1210 1220 1230 1240 1250
NSNSELKAIR PPCPDTAPPS SALHWLADLA TQKAKEETKD AGSLRSVLNK
1260 1270 1280 1290 1300
ESHSPFGLDS FNSTAKVSPL TPKLFNSLLL GPTASNSKTE GSSLRDLLHS
1310 1320 1330 1340 1350
GPGKLPQTPL DTGIPFPPVF SSSSAVAKSK ASLPDFLDHI IASVVENKKT
1360 1370 1380 1390 1400
SDPSKRSCNL TDTQKEVKEM AMGLNVLDPH TSHSWLCDGR LLCLHDPSNK
1410 1420 1430 1440 1450
NNWKIFRECW KQGQPVLVSG VHKKLKSELW KPEAFSQEFG DQDVDLVNCR
1460 1470 1480 1490 1500
NCAIISDVKV RDFWDGFEII CKRLRSEDGQ PMVLKLKDWP PGEDFRDMMP
1510 1520 1530 1540 1550
TRFEDLMENL PLPEYTKRDG RLNLASRLPS YFVRPDLGPK MYNAYGLITA
1560 1570 1580 1590 1600
EDRRVGTTNL HLDVSDAVNV MVYVGIPVGE GAHDEEVLKT IDEGDADEVT
1610 1620 1630 1640 1650
KQRIHDGKEK PGALWHIYAA KDAEKIRELL RKVGEEQGQE NPPDHDPIHD
1660 1670 1680 1690 1700
QSWYLDQILR KRLFEEYGVQ GWAIVQFLGD AVFIPAGAPH QVHNLYSCIK
1710 1720 1730 1740 1750
VAEDFVSPEH VKHCFRLTQE FRHLSNTHTN HEDKLQVKNI IYHAVKDAVG
1760
TLKAHESKLA RS
Length:1,762
Mass (Da):191,460
Last modified:March 24, 2009 - v1
Checksum:iEB0D535476236CDF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC114820 Genomic DNA. No translation available.
AC145591 Genomic DNA. No translation available.
BC151084 mRNA. Translation: AAI51085.1.
RefSeqiNP_001074725.1. NM_001081256.1.
UniGeneiMm.277906.

Genome annotation databases

EnsembliENSMUST00000043775; ENSMUSP00000037628; ENSMUSG00000038773.
GeneIDi277250.
KEGGimmu:277250.
UCSCiuc008elq.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC114820 Genomic DNA. No translation available.
AC145591 Genomic DNA. No translation available.
BC151084 mRNA. Translation: AAI51085.1 .
RefSeqi NP_001074725.1. NM_001081256.1.
UniGenei Mm.277906.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000043775 ; ENSMUSP00000037628 ; ENSMUSG00000038773 .
GeneIDi 277250.
KEGGi mmu:277250.
UCSCi uc008elq.1. mouse.

Organism-specific databases

CTDi 51780.
MGIi MGI:1923356. Kdm3b.

Phylogenomic databases

GeneTreei ENSGT00530000063039.
HOGENOMi HOG000007471.
HOVERGENi HBG096070.
KOi K15601.
OMAi IICKRLR.
OrthoDBi EOG7B5WVG.
TreeFami TF324723.

Enzyme and pathway databases

Reactomei REACT_256030. HDMs demethylate histones.

Miscellaneous databases

NextBioi 393733.
SOURCEi Search...

Gene expression databases

Genevestigatori B9EKS2.

Family and domain databases

InterProi IPR003347. JmjC_dom.
[Graphical view ]
Pfami PF02373. JmjC. 1 hit.
[Graphical view ]
SMARTi SM00558. JmjC. 1 hit.
[Graphical view ]
PROSITEi PS51184. JMJC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB9EKS2_MOUSE
AccessioniPrimary (citable) accession number: B9EKS2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: November 26, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3