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B9EHK8

- B9EHK8_MOUSE

UniProt

B9EHK8 - B9EHK8_MOUSE

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Protein
Submitted name:

Homeo box A1

Gene

Hoxa1

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 5 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. abducens nerve formation Source: Ensembl
  2. anatomical structure formation involved in morphogenesis Source: MGI
  3. anatomical structure morphogenesis Source: MGI
  4. anterior/posterior pattern specification Source: MGI
  5. artery morphogenesis Source: Ensembl
  6. cellular response to retinoic acid Source: MGI
  7. central nervous system neuron differentiation Source: MGI
  8. cochlea morphogenesis Source: Ensembl
  9. cognition Source: Ensembl
  10. embryonic neurocranium morphogenesis Source: Ensembl
  11. facial nerve structural organization Source: MGI
  12. facial nucleus development Source: MGI
  13. hindbrain development Source: MGI
  14. inner ear morphogenesis Source: MGI
  15. motor neuron axon guidance Source: MGI
  16. nervous system development Source: MGI
  17. neuromuscular process Source: Ensembl
  18. optokinetic behavior Source: Ensembl
  19. outer ear morphogenesis Source: Ensembl
  20. positive regulation of transcription from RNA polymerase II promoter Source: MGI
  21. regulation of behavior Source: Ensembl
  22. regulation of transcription from RNA polymerase II promoter Source: MGI
  23. rhombomere 3 development Source: MGI
  24. rhombomere 4 development Source: MGI
  25. rhombomere 5 development Source: MGI
  26. semicircular canal formation Source: Ensembl
  27. sensory perception of sound Source: Ensembl
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Homeo box A1Imported
Gene namesi
Name:Hoxa1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:96170. Hoxa1.

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiB9EHK8.
ExpressionAtlasiB9EHK8. differential.
GenevestigatoriB9EHK8.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000000964.

Family & Domainsi

Sequence similaritiesi

Contains homeobox DNA-binding domain.SAAS annotation

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000247020.
HOVERGENiHBG006089.
PhylomeDBiB9EHK8.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9EHK8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDNARMNSFL EYPILGSGDS GTCSARAYPS DHGITTFQSC AVSANSCGGD
60 70 80 90 100
DRFLVGRGVQ ISSPHHHHHH HHHHHHPQTA TYQTSGNLGI SYSHSSCGPS
110 120 130 140 150
YGAQNFSAPY GPYGLNQEAD VSGGYPPCAP AVYSGNLSTP MVQHHHHHQG
160 170 180 190 200
YAGGTVGSPQ YIHHSYGQEQ QTLALATYNN SLSPLHASHQ EACRSPASET
210 220 230 240 250
SSPAQTFDWM KVKRNPPKTG KVGEYGYVGQ PNAVRTNFTT KQLTELEKEF
260 270 280 290 300
HFNKYLTRAR RVEIAASLQL NETQVKIWFQ NRRMKQKKRE KEGLLPISPA
310 320 330
TPPGSDEKTE ESSEKSSPSP SAPSPASSTS DTLTTSH
Length:337
Mass (Da):36,761
Last modified:March 24, 2009 - v1
Checksum:i5BE0FC3142D28DB2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC138098 mRNA. Translation: AAI38099.1.
UniGeneiMm.197.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC138098 mRNA. Translation: AAI38099.1 .
UniGenei Mm.197.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000000964.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

MGIi MGI:96170. Hoxa1.

Phylogenomic databases

HOGENOMi HOG000247020.
HOVERGENi HBG006089.
PhylomeDBi B9EHK8.

Miscellaneous databases

NextBioi 35547937.
SOURCEi Search...

Gene expression databases

Bgeei B9EHK8.
ExpressionAtlasi B9EHK8. differential.
Genevestigatori B9EHK8.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
[Graphical view ]
PRINTSi PR00024. HOMEOBOX.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiB9EHK8_MOUSE
AccessioniPrimary (citable) accession number: B9EHK8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)