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Protein
Submitted name:

SYNJ1 protein

Gene

SYNJ1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SYNJ1 proteinImported
Gene namesi
Name:SYNJ1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36285.

PTM / Processingi

Proteomic databases

PeptideAtlasiB9EGN3.
PRIDEiB9EGN3.

Expressioni

Gene expression databases

GenevisibleiB9EGN3. HS.

Structurei

3D structure databases

ProteinModelPortaliB9EGN3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini119 – 442324SACInterPro annotationAdd
BLAST
Domaini897 – 96670RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000007937.
HOVERGENiHBG079225.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
3.60.10.10. 1 hit.
InterProiIPR015047. DUF1866.
IPR005135. Endo/exonuclease/phosphatase.
IPR000300. IPPc.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR002013. SAC_dom.
[Graphical view]
PfamiPF08952. DUF1866. 1 hit.
PF03372. Exo_endo_phos. 1 hit.
PF02383. Syja_N. 1 hit.
[Graphical view]
SMARTiSM01165. DUF1866. 1 hit.
SM00128. IPPc. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
SSF56219. SSF56219. 2 hits.
PROSITEiPS50102. RRM. 1 hit.
PS50275. SAC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9EGN3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFSKGFRIY HKLDPPPFSL IVETRHKEEC LMFESGAVAV LSSAEKEAIK
60 70 80 90 100
GTYSKVLDAY GLLGVLRLNL GDTMLHYLVL VTGCMSVGKI QESEVFRVTS
110 120 130 140 150
TEFISLRIDS SDEDRISEVR KVLNSGNFYF AWSASGISLD LSLNAHRSMQ
160 170 180 190 200
EQTTDNRFFW NQSLHLHLKH YGVNCDDWLL RLMCGGVEIR TIYAAHKQAK
210 220 230 240 250
ACLISRLSCE RAGTRFNVRG TNDDGHVANF VETEQVVYLD DSVSSFIQIR
260 270 280 290 300
GSVPLFWEQP GLQVGSHRVR MSRGFEANAP AFDRHFRTLK NLYGRQIIVN
310 320 330 340 350
LLGSKEGEHM LSKAFQSHLK ASEHAADIQM VNFDYHQMVK GGKAEKLHSV
360 370 380 390 400
LKPQVQKFLD YGFFYFNGSE VQRCQSGTVR TNCLDCLDRT NSVQAFLGLE
410 420 430 440 450
MLAKQLEALG LAEKPQLVTR FQEVFRSMWS VNGDSISKIY AGTGALEGKA
460 470 480 490 500
KAGKLKDGAR SVTRTIQNNF FDSSKQEAID VLLLGNTLNS DLADKARALL
510 520 530 540 550
TTGSLRASSK VLKSMCENFY KYSKPKKIRV CVGTWNVNGG KQFRSIAFKN
560 570 580 590 600
QTLTDWLLDA PKLAGIQEFQ DKRSKPTDIF AIGFEEMVEL NAGNIVSAST
610 620 630 640 650
TNQKLWAVEL QKTISRDNKY VLLASEQLVG VCLFVFIRPQ HAPFIRDVAV
660 670 680 690 700
DTVKTGMGGA TGNKGAVAIR MLFHTTSLCF VCSHFAAGQS QVKERNEDFI
710 720 730 740 750
EIARKLSFPM GRMLFSHDYV FWCGDFNYRI DLPNEEVKEL IRQQNWDSLI
760 770 780 790 800
AGDQLINQKN AGQVFRGFLE GKVTFAPTYK YDLFSDDYDT SEKCRTPAWT
810 820 830 840 850
DRVLWRRRKW PFDRSAEDLD LLNASFQDES KILYTWTPGT LLHYGRAELK
860 870 880 890 900
TSDHRPVVAL IDIDIFEVEA EERQNIYKEV IAVQGPPDGT VLVSIKSSLP
910 920 930 940 950
ENNFFDDALI DELLQQFASF GEVILIRFVE DKMWVTFLEG SSALNVLSLN
960 970 980 990 1000
GKELLNRTIT IALKSPDWIK NLEEEMSLEK ISIALPSSTS STLLGEDAEV
1010 1020 1030 1040 1050
AADFDMEGDV DDYSAEVEEL LPQHLQPSSS SGLGTSPSSS PRTSPCQSPT
1060 1070 1080 1090 1100
ISEGPVPSLP IRPSRAPSRT PGPPSAQSSP IDAQPATPLP QKDPAQPLEP
1110 1120 1130 1140 1150
KRPPPPRPVA PPTRPAPPQR PPPPSGRSQP SPQAGLAGPG PAGYSTARPT
1160 1170 1180 1190 1200
IPPRAGVISA PQSHARASAG RLTPESQSKT SETSKGSTFL PEPLKPQAAF
1210 1220 1230 1240 1250
PPQSSLPPPA QRLQEPLVPV AAPMPQSGPQ PNLETPPQPP PRSRSSHSLP
1260
SEASSQPQQE QPSG
Length:1,264
Mass (Da):139,943
Last modified:March 24, 2009 - v1
Checksum:iAB81D870F57E0ED6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC136603 mRNA. Translation: AAI36604.1.
RefSeqiNP_001153778.1. NM_001160306.1.
UniGeneiHs.473632.

Genome annotation databases

GeneIDi8867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC136603 mRNA. Translation: AAI36604.1.
RefSeqiNP_001153778.1. NM_001160306.1.
UniGeneiHs.473632.

3D structure databases

ProteinModelPortaliB9EGN3.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PeptideAtlasiB9EGN3.
PRIDEiB9EGN3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi8867.

Organism-specific databases

CTDi8867.
PharmGKBiPA36285.

Phylogenomic databases

HOGENOMiHOG000007937.
HOVERGENiHBG079225.

Miscellaneous databases

ChiTaRSiSYNJ1. human.
GenomeRNAii8867.

Gene expression databases

GenevisibleiB9EGN3. HS.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
3.60.10.10. 1 hit.
InterProiIPR015047. DUF1866.
IPR005135. Endo/exonuclease/phosphatase.
IPR000300. IPPc.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR002013. SAC_dom.
[Graphical view]
PfamiPF08952. DUF1866. 1 hit.
PF03372. Exo_endo_phos. 1 hit.
PF02383. Syja_N. 1 hit.
[Graphical view]
SMARTiSM01165. DUF1866. 1 hit.
SM00128. IPPc. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
SSF56219. SSF56219. 2 hits.
PROSITEiPS50102. RRM. 1 hit.
PS50275. SAC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB9EGN3_HUMAN
AccessioniPrimary (citable) accession number: B9EGN3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: July 6, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.