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B9DY93 (B9DY93_CLOK1) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118
Ordered Locus Names:CKR_0167 EMBL BAH05218.1, CKR_0181 EMBL BAH05232.1
OrganismClostridium kluyveri (strain NBRC 12016) [Complete proteome] [HAMAP] EMBL BAH05218.1
Taxonomic identifier583346 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length397 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
B9DY93 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: EEF83F11671FBADF

FASTA39743,675
        10         20         30         40         50         60 
MSKEKFERTK PHVNIGTIGH VDHGKTTLTA AITMVLAKEG KASATKYDEI DKAPEEKERG 

        70         80         90        100        110        120 
ITINTAHVEY ETEVRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI 

       130        140        150        160        170        180 
LLASRVGVQY IVVFLNKSDQ VDDPELIELV EMEVRELLSE YGFPGDDVPI IVGSALKVIE 

       190        200        210        220        230        240 
NPEDAEATKC IYELMEAVDT YIPTPERPVD KPFLMPIEDV FTITGRGTVA TGRVESGVLK 

       250        260        270        280        290        300 
IGDEVEIVGL KEEKKKTVCT GVEMFRKLLD QAMAGDNIGA LLRGIQREEI ERGQVLSKPG 

       310        320        330        340        350        360 
SVKPHKKFVG QVYVLKKEEG GRHTPFFNGY RPQFYFRTTD VTGSISLPEG VEMVMPGDHI 

       370        380        390 
DMNVELITPV AMHEGLRFAI REGGRTVGSG VVTTVSE 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Clostridium kluyveri and comaprative genomics of Clostridia species."
Inui M., Nonaka H., Shinoda Y., Ikenaga Y., Abe M., Naito K., Vertes A.A., Yukawa H.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NBRC 12016 EMBL BAH05218.1.
[2]"Complete genome sequence of Clostridium kluyveri and comparative genomics of Clostridia species."
Inui M., Nonaka H., Shinoda Y., Ikenaga Y., Abe M., Naito K., Vertes A.A., Yukawa H.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 12016.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009049 Genomic DNA. Translation: BAH05218.1.
AP009049 Genomic DNA. Translation: BAH05232.1.
RefSeqYP_002470632.1. NC_011837.1.
YP_002470646.1. NC_011837.1.

3D structure databases

ProteinModelPortalB9DY93.
SMRB9DY93. Positions 2-397.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING583346.CKR_0181.

Proteomic databases

PRIDEB9DY93.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAH05218; BAH05218; CKR_0167.
BAH05232; BAH05232; CKR_0181.
GeneID7273609.
7274968.
KEGGckr:CKR_0167.
ckr:CKR_0181.
PATRIC19469998. VBICloKlu118830_0258.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0050.
HOGENOMHOG000229290.
KOK02358.
OrthoDBEOG6R5C6X.
ProtClustDBPRK12735.

Enzyme and pathway databases

BioCycCKLU583346:GJNQ-200-MONOMER.
CKLU583346:GJNQ-214-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9DY93_CLOK1
AccessionPrimary (citable) accession number: B9DY93
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 16, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)