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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

SUB1387

Organism
Streptococcus uberis (strain ATCC BAA-854 / 0140J)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciSUBE218495:GJ7D-1431-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:SUB1387Imported
OrganismiStreptococcus uberis (strain ATCC BAA-854 / 0140J)Imported
Taxonomic identifieri218495 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesStreptococcaceaeStreptococcus
Proteomesi
  • UP000000449 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi218495.SUB1387.

Structurei

3D structure databases

ProteinModelPortaliB9DV44.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini160 – 439280SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9DV44-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANNWKREAR GKALMAIEDI FDNGAYSNLA LNQHLNHQAL NAKDKALITE
60 70 80 90 100
IVYGTVSRKL TLEWHLSHVI EDRNRLDKWV YYLLMISLYQ LLYLDKVPQH
110 120 130 140 150
AIVNDAVNIA KNRGNNRGAE KFVNAVLRQL TNHPLPDPSL IKRKNKRYSI
160 170 180 190 200
LYSIPTWLVI KLIDQFGEER ALKIMESLSL NSKISLRVIN LDKMEIIKEA
210 220 230 240 250
LDAEMSLLSP CGLTKENGYM ALHDFFQRGD ITIQDESSQL VAPTLAIQEN
260 270 280 290 300
DIVLDACSAP GGKTSHMASY LKTGKVVALD IHEHKLDLVR ENAERLGLSE
310 320 330 340 350
KIETRLLDAR QVHEVFGPDS FDKILVDAPC SGIGLIRRKP DIKYNKDLQD
360 370 380 390 400
LKQLQAVQLE ILSSVCQTIR KGGIITYSTC TIFDEENVQV IKRFLKEHPN
410 420 430 440
FEQIKLKHTQ AEIVKDGCLV ITPEQFQTDG FFIAQIRRVL
Length:440
Mass (Da):50,091
Last modified:March 24, 2009 - v1
Checksum:iDB1BD175E44F1120
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM946015 Genomic DNA. Translation: CAR43000.1.
RefSeqiWP_015911707.1. NC_012004.1.

Genome annotation databases

EnsemblBacteriaiCAR43000; CAR43000; SUB1387.
GeneIDi24161365.
KEGGisub:SUB1387.
PATRICi19808498. VBIStrUbe20775_1353.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM946015 Genomic DNA. Translation: CAR43000.1.
RefSeqiWP_015911707.1. NC_012004.1.

3D structure databases

ProteinModelPortaliB9DV44.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi218495.SUB1387.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAR43000; CAR43000; SUB1387.
GeneIDi24161365.
KEGGisub:SUB1387.
PATRICi19808498. VBIStrUbe20775_1353.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Enzyme and pathway databases

BioCyciSUBE218495:GJ7D-1431-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR018314. Fmu/NOL1/Nop2p_CS.
IPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS01153. NOL1_NOP2_SUN. 1 hit.
PS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-854 / 0140JImported.

Entry informationi

Entry nameiB9DV44_STRU0
AccessioniPrimary (citable) accession number: B9DV44
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 11, 2016
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.