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Protein

16S rRNA (cytosine(967)-C(5))-methyltransferase

Gene

Sca_0837

Organism
Staphylococcus carnosus (strain TM300)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.SAAS annotation

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

Catalytic activityi

S-adenosyl-L-methionine + cytosine(967) in 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(967) in 16S rRNA.SAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei279S-adenosyl-L-methioninePROSITE-ProRule annotation1
Binding sitei321S-adenosyl-L-methioninePROSITE-ProRule annotation1
Active sitei374NucleophilePROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionMethyltransferasePROSITE-ProRule annotationSAAS annotation, RNA-bindingPROSITE-ProRule annotationSAAS annotation, Transferase
Biological processrRNA processingSAAS annotation
LigandS-adenosyl-L-methioninePROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
16S rRNA (cytosine(967)-C(5))-methyltransferaseSAAS annotation (EC:2.1.1.176SAAS annotation)
Gene namesi
Ordered Locus Names:Sca_0837Imported
OrganismiStaphylococcus carnosus (strain TM300)Imported
Taxonomic identifieri396513 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000000444 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi396513.Sca_0837

Structurei

3D structure databases

ProteinModelPortaliB9DPM6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini166 – 432SAM_MT_RSMB_NOPInterPro annotationAdd BLAST267

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni255 – 261S-adenosyl-L-methionine bindingPROSITE-ProRule annotation7

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.PROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ Bacteria
COG0144 LUCA
HOGENOMiHOG000037300
KOiK03500
OMAiLRVNRQH

Family and domain databases

Gene3Di1.10.940.10, 1 hit
InterProiView protein in InterPro
IPR001678 MeTrfase_RsmB/NOP2
IPR035926 NusB-like_sf
IPR006027 NusB_RsmB_TIM44
IPR023267 RCMT
IPR004573 rRNA_ssu_MeTfrase_B
IPR029063 SAM-dependent_MTases
PfamiView protein in Pfam
PF01189 Methyltr_RsmB-F, 1 hit
PF01029 NusB, 1 hit
PRINTSiPR02008 RCMTFAMILY
SUPFAMiSSF48013 SSF48013, 1 hit
SSF53335 SSF53335, 1 hit
TIGRFAMsiTIGR00563 rsmB, 1 hit
PROSITEiView protein in PROSITE
PS51686 SAM_MT_RSMB_NOP, 1 hit

Sequencei

Sequence statusi: Complete.

B9DPM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENVRALAFE TLEAIFQDKA YSNLKLNEVL KANELSRADK NLLTELVYGT
60 70 80 90 100
IKRKITLEYY LKPFVQTRIK GWMRHLLWMS IYQYQYLDKV PDHAIINEAV
110 120 130 140 150
EIAKVRGGLH NSKVVNGILR NMMRSNLPNP ADIKDDKQRI SIMYSMPKWI
160 170 180 190 200
VKHWVTHYGV DTTERIAQSM LERPGQTVRV NLTRKTVAQA IQQLQDEGYT
210 220 230 240 250
VVQDSDIEYC LHASGKPVAE SRAFKDGIVS IQDKSSMFVA QILAPAEGDD
260 270 280 290 300
ILDACSAPGG KACQTAELLD GTGHVDATDI HEHKIDLIEH NVRKLRLKNV
310 320 330 340 350
TAFQHDDTKP YEKMYDKILV DAPCSGLGVL RHKPEIKYMQ TPETINNLVE
360 370 380 390 400
LQLEIMNNIK DSVKPGGVIV YSTCTIEQME NENVIYTFLK QNKDFEFEPF
410 420 430
SHPRTKEEVK TLQILPQDFD SDGFFITKIR RKENK
Length:435
Mass (Da):49,843
Last modified:March 24, 2009 - v1
Checksum:i3957C020115C98DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM295250 Genomic DNA Translation: CAL27747.1

Genome annotation databases

KEGGisca:SCA_0837

Similar proteinsi

Entry informationi

Entry nameiB9DPM6_STACT
AccessioniPrimary (citable) accession number: B9DPM6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 23, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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