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B9DKM0 (DEOB_STACT) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphopentomutase

EC=5.4.2.7
Alternative name(s):
Phosphodeoxyribomutase
Gene names
Name:deoB
Ordered Locus Names:Sca_2011
OrganismStaphylococcus carnosus (strain TM300) [Complete proteome] [HAMAP]
Taxonomic identifier396513 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesStaphylococcus

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740

Catalytic activity

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740

Cofactor

Binds 1 or 2 manganese ions Potential.

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740.

Sequence similarities

Belongs to the phosphopentomutase family.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 396396Phosphopentomutase HAMAP-Rule MF_00740
PRO_1000148251

Sites

Metal binding141Manganese By similarity
Metal binding2911Manganese By similarity
Metal binding3271Manganese By similarity
Metal binding3281Manganese By similarity
Metal binding3391Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
B9DKM0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 9002F8DADD35ED38

FASTA39644,366
        10         20         30         40         50         60 
MTTPFKRIHL IVMDSVGIGE GPDAAAFNDE GSHTLKHTLE GFEQDLPNLQ RLGLGNIAPL 

        70         80         90        100        110        120 
PVVEEVEQPE AFYTKLSEAS VGKDTMTGHW EIMGLNIMQP FKVYPDGFPD ELVKEIEDMT 

       130        140        150        160        170        180 
GRKVVANRPA SGTQIIDEWG EHQMKTGDLI VYTSADPVLQ IAAHEDVIPL EELYDICEKV 

       190        200        210        220        230        240 
RELTKDPKYL IGRIIARPYV GEPGNFTRTS NRHDYALKPF GRTVMNELKD NNYDVIAIGK 

       250        260        270        280        290        300 
INDIYDGEGV TEAIRTKNNM DGMDKLIDVV KHDFTGISFL NLVDFDALYG HRRDKEGYAQ 

       310        320        330        340        350        360 
AIKDFDERLP ELIDNLQEDD LVIITADHGN DPIAPGTDHT REYIPVLLYS PKLKDKAHEL 

       370        380        390 
SGDTTFSSIG ATIADNFDVP LPEYGRSFLS EMNVEK 

« Hide

References

[1]"Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300."
Rosenstein R., Nerz C., Biswas L., Resch A., Raddatz G., Schuster S.C., Goetz F.
Appl. Environ. Microbiol. 75:811-822(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: TM300.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM295250 Genomic DNA. Translation: CAL28916.1.
RefSeqYP_002635101.1. NC_012121.1.

3D structure databases

ProteinModelPortalB9DKM0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING396513.Sca_2011.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7550983.
KEGGsca:Sca_2011.
PATRIC19604894. VBIStaCar105558_2009.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMACHASGTE.
OrthoDBEOG6R5C7J.
ProtClustDBPRK05362.

Enzyme and pathway databases

BioCycSCAR396513:GJ9G-2072-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOB_STACT
AccessionPrimary (citable) accession number: B9DKM0
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: February 19, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways