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B9DKM0

- DEOB_STACT

UniProt

B9DKM0 - DEOB_STACT

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Protein
Phosphopentomutase
Gene
deoB, Sca_2011
Organism
Staphylococcus carnosus (strain TM300)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity.UniRule annotation

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

Cofactori

Binds 1 or 2 manganese ions Reviewed prediction.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi14 – 141Manganese By similarity
Metal bindingi291 – 2911Manganese By similarity
Metal bindingi327 – 3271Manganese By similarity
Metal bindingi328 – 3281Manganese By similarity
Metal bindingi339 – 3391Manganese By similarity

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciSCAR396513:GJ9G-2072-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphopentomutase (EC:5.4.2.7)
Alternative name(s):
Phosphodeoxyribomutase
Gene namesi
Name:deoB
Ordered Locus Names:Sca_2011
OrganismiStaphylococcus carnosus (strain TM300)
Taxonomic identifieri396513 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcus
ProteomesiUP000000444: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 396396PhosphopentomutaseUniRule annotation
PRO_1000148251Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi396513.Sca_2011.

Structurei

3D structure databases

ProteinModelPortaliB9DKM0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiIRTKDNM.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

B9DKM0-1 [UniParc]FASTAAdd to Basket

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MTTPFKRIHL IVMDSVGIGE GPDAAAFNDE GSHTLKHTLE GFEQDLPNLQ    50
RLGLGNIAPL PVVEEVEQPE AFYTKLSEAS VGKDTMTGHW EIMGLNIMQP 100
FKVYPDGFPD ELVKEIEDMT GRKVVANRPA SGTQIIDEWG EHQMKTGDLI 150
VYTSADPVLQ IAAHEDVIPL EELYDICEKV RELTKDPKYL IGRIIARPYV 200
GEPGNFTRTS NRHDYALKPF GRTVMNELKD NNYDVIAIGK INDIYDGEGV 250
TEAIRTKNNM DGMDKLIDVV KHDFTGISFL NLVDFDALYG HRRDKEGYAQ 300
AIKDFDERLP ELIDNLQEDD LVIITADHGN DPIAPGTDHT REYIPVLLYS 350
PKLKDKAHEL SGDTTFSSIG ATIADNFDVP LPEYGRSFLS EMNVEK 396
Length:396
Mass (Da):44,366
Last modified:March 24, 2009 - v1
Checksum:i9002F8DADD35ED38
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM295250 Genomic DNA. Translation: CAL28916.1.
RefSeqiWP_015901252.1. NC_012121.1.
YP_002635101.1. NC_012121.1.

Genome annotation databases

GeneIDi7550983.
KEGGisca:Sca_2011.
PATRICi19604894. VBIStaCar105558_2009.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM295250 Genomic DNA. Translation: CAL28916.1 .
RefSeqi WP_015901252.1. NC_012121.1.
YP_002635101.1. NC_012121.1.

3D structure databases

ProteinModelPortali B9DKM0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 396513.Sca_2011.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7550983.
KEGGi sca:Sca_2011.
PATRICi 19604894. VBIStaCar105558_2009.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi IRTKDNM.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci SCAR396513:GJ9G-2072-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300."
    Rosenstein R., Nerz C., Biswas L., Resch A., Raddatz G., Schuster S.C., Goetz F.
    Appl. Environ. Microbiol. 75:811-822(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TM300.

Entry informationi

Entry nameiDEOB_STACT
AccessioniPrimary (citable) accession number: B9DKM0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: September 3, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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