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Protein
Submitted name:

Uncharacterized protein

Gene

atrn

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:atrnImported
Synonyms:si:dkey-259n11.1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 13

Organism-specific databases

ZFINiZDB-GENE-090312-21. atrn.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei1233 – 125725HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PaxDbiB8JI13.
PeptideAtlasiB8JI13.

Expressioni

Gene expression databases

BgeeiENSDARG00000062164.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000083961.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini49 – 8133EGF-likeInterPro annotationAdd
BLAST
Domaini83 – 199117CUBInterPro annotationAdd
BLAST
Domaini197 – 23438EGF-likeInterPro annotationAdd
BLAST
Domaini235 – 26935EGF-likeInterPro annotationAdd
BLAST
Domaini747 – 868122C-type lectinInterPro annotationAdd
BLAST
Domaini1017 – 106246Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini1063 – 111149Laminin EGF-likeInterPro annotationAdd
BLAST

Keywords - Domaini

EGF-like domainSAAS annotation, Laminin EGF-like domainSAAS annotation, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG1388. Eukaryota.
ENOG410XRW4. LUCA.
GeneTreeiENSGT00390000001118.
HOGENOMiHOG000231727.
HOVERGENiHBG004312.
OMAiYPYKYTT.
PhylomeDBiB8JI13.

Family and domain databases

Gene3Di2.120.10.80. 2 hits.
2.60.120.290. 1 hit.
3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR016187. C-type_lectin_fold.
IPR000859. CUB_dom.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR002049. Laminin_EGF.
IPR016201. Plexin-like_fold.
IPR002165. Plexin_repeat.
[Graphical view]
PfamiPF00431. CUB. 1 hit.
PF01344. Kelch_1. 1 hit.
PF00059. Lectin_C. 1 hit.
PF01437. PSI. 1 hit.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
SM00042. CUB. 1 hit.
SM00181. EGF. 4 hits.
SM00180. EGF_Lam. 2 hits.
SM00423. PSI. 5 hits.
[Graphical view]
SUPFAMiSSF49854. SSF49854. 1 hit.
SSF56436. SSF56436. 1 hit.
PROSITEiPS50041. C_TYPE_LECTIN_2. 1 hit.
PS01180. CUB. 1 hit.
PS00022. EGF_1. 3 hits.
PS01186. EGF_2. 3 hits.
PS50026. EGF_3. 3 hits.
PS01248. EGF_LAM_1. 1 hit.
PS50027. EGF_LAM_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8JI13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAEVRRALG RGWSLTVGLA HVGLHGTALR SLLFITALSG LLRLPAATEA
60 70 80 90 100
KECDKPCLNG QCSAASGACV CETGWVGEQC QHCGGRFRLT GPSGYLSDGP
110 120 130 140 150
GNYKYKTKCT WLIEGQPNSI LRLRFEHFAT ECSWDHLYVY DGDSIYSPLL
160 170 180 190 200
AAFSGLIVPE SYSNETVPEV VAHSGFTLLH FFSDAAYNLT GFNISYRLNT
210 220 230 240 250
CPNNCSDRGE CRVGNSSESV QCVCEDGWKG EACDVPYCSS DCGFPLRGQC
260 270 280 290 300
HNSTKRCLCK PGWQGLDCSI TVPANVSFWT REEYSGYGLV RASHKAVVHE
310 320 330 340 350
DVMWVIGGHV FNYTHYQMVT AFNISSQSWM TLNRSVHSVT GRYGHSLSVH
360 370 380 390 400
EDKIYMYGGK IDSTGNVTSE LWVFHTRNQS WVLLSPRAKE QYAVVGHSAH
410 420 430 440 450
TVQLNPDGSE PVILVVFGHC PLYGYISQVQ QYNIVKNTWS VLETRGALVQ
460 470 480 490 500
GGYGHSSVYD PQTRSIYIHG GYKAFTANKY GLAGDLYRYD VDERKWLILR
510 520 530 540 550
DSGFFRYLHT AVIAGGNILV FGGNTHNDTS MSHGAKCFSS DFIAYNLACD
560 570 580 590 600
EWTVLPNPDL YHDVNRFGHS AVYHNGVMYV YGGFNSLMLG DVLRFTPASC
610 620 630 640 650
AAFSEHLECV TAVPGVKCVW NSSTSTCVPW DAAALLDMEA LRNTCSPRGY
660 670 680 690 700
ADGEKCEQYS DCYSCTANTN SCQWCSTLCV SSHSNCTSSP GGIMEYEACP
710 720 730 740 750
KDNPSSVCSK RTSCKSCATD QNCQWETRNQ ECTTLPGNIC GESWHLVGNS
760 770 780 790 800
CLKLMTAKDS YDNAKLVCRN QQAVLASLTT QKKVQFVLKE MHNRSLQSKA
810 820 830 840 850
VITPWVGLRK INVSYWCWED MSPFTNSTLQ WLPGEPSDAG FCGYLAEPTF
860 870 880 890 900
NGLKAATCVN SVNGSLCERP TNHSVKQCRT PCALRSSCSE CTSGSSECMW
910 920 930 940 950
CSNMRQCVDS NAYVPSFPYG QCMEWYTMNS CPPENCSGYK TCGHCLDQPG
960 970 980 990 1000
CGWCTDPSNT GRGQCIEGSY RGPVQTLFHA PSTSGPSILP APQPMLNVSL
1010 1020 1030 1040 1050
CPVEGNYNWS FIQCPACQCN GHSSCVNESV CERCEDLTTG KQCESCISGY
1060 1070 1080 1090 1100
YGDPTNGGSC QPCKCNGHAS MCNSNNGKCF CTTKGIKGDR CHVCEVENRY
1110 1120 1130 1140 1150
QGNPLKGTCY YTLLIDYQFT FSLSQEDDRY YTAINFVATP DEQNRDLDMF
1160 1170 1180 1190 1200
INASKNFNLN ITWATSFAAG TQAGEEIPIV SRSNIKEFKD SFSNEKFDFR
1210 1220 1230 1240 1250
SNTNITFYVY VSNFTWPIKI QIAFSQHSNF MDLVQFFVTF FSCFLSLLLV
1260 1270 1280 1290 1300
AAVVWKIKQS CWASRRREQL LREMQQMASR PFATINVALE TDEEPPDLIG
1310 1320 1330 1340
GNVKSVPKPI ALEPCFGNKA AVLSIFVRLP RGPGGIPPPG QSVWQ
Length:1,345
Mass (Da):148,654
Last modified:March 3, 2009 - v1
Checksum:i925BB0555FB777F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR388098 Genomic DNA. No translation available.
CR589874 Genomic DNA. No translation available.
CT583702 Genomic DNA. No translation available.
RefSeqiNP_001139087.1. NM_001145615.1.
UniGeneiDr.81745.

Genome annotation databases

EnsembliENSDART00000131875; ENSDARP00000118575; ENSDARG00000062164.
GeneIDi794975.
KEGGidre:794975.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR388098 Genomic DNA. No translation available.
CR589874 Genomic DNA. No translation available.
CT583702 Genomic DNA. No translation available.
RefSeqiNP_001139087.1. NM_001145615.1.
UniGeneiDr.81745.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000083961.

Proteomic databases

PaxDbiB8JI13.
PeptideAtlasiB8JI13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000131875; ENSDARP00000118575; ENSDARG00000062164.
GeneIDi794975.
KEGGidre:794975.

Organism-specific databases

CTDi8455.
ZFINiZDB-GENE-090312-21. atrn.

Phylogenomic databases

eggNOGiKOG1388. Eukaryota.
ENOG410XRW4. LUCA.
GeneTreeiENSGT00390000001118.
HOGENOMiHOG000231727.
HOVERGENiHBG004312.
OMAiYPYKYTT.
PhylomeDBiB8JI13.

Gene expression databases

BgeeiENSDARG00000062164.

Family and domain databases

Gene3Di2.120.10.80. 2 hits.
2.60.120.290. 1 hit.
3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR016187. C-type_lectin_fold.
IPR000859. CUB_dom.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR002049. Laminin_EGF.
IPR016201. Plexin-like_fold.
IPR002165. Plexin_repeat.
[Graphical view]
PfamiPF00431. CUB. 1 hit.
PF01344. Kelch_1. 1 hit.
PF00059. Lectin_C. 1 hit.
PF01437. PSI. 1 hit.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
SM00042. CUB. 1 hit.
SM00181. EGF. 4 hits.
SM00180. EGF_Lam. 2 hits.
SM00423. PSI. 5 hits.
[Graphical view]
SUPFAMiSSF49854. SSF49854. 1 hit.
SSF56436. SSF56436. 1 hit.
PROSITEiPS50041. C_TYPE_LECTIN_2. 1 hit.
PS01180. CUB. 1 hit.
PS00022. EGF_1. 3 hits.
PS01186. EGF_2. 3 hits.
PS50026. EGF_3. 3 hits.
PS01248. EGF_LAM_1. 1 hit.
PS50027. EGF_LAM_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB8JI13_DANRE
AccessioniPrimary (citable) accession number: B8JI13
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: September 7, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.