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Protein
Submitted name:

DNA ligase D

Gene

A2cp1_0836

Organism
Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciADEH455488:GH35-841-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:A2cp1_0836Imported
OrganismiAnaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)Imported
Taxonomic identifieri455488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeAnaeromyxobacteraceaeAnaeromyxobacter
ProteomesiUP000007089: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi455488.A2cp1_0836.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiERRTHPF.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8JDU3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPACPAGARR GRRLPRHAGG GELSRVARAP VPIYRAQLAT LVATPPAGDG
60 70 80 90 100
WVHETKYDGY RIGCSLEGGR ATLWSRRGND WTAQFPEVAQ AAEALAARSA
110 120 130 140 150
LLDGEVAAVL PGGRTSFQAL QQAFSGGRRS LAYFVFDLLW LDGEDLSGRP
160 170 180 190 200
LLERKDALRR LLGARGAVLR YAPHVEAPGA EVLREACRLG LEGIVSKRAD
210 220 230 240 250
APYRPGRNTT WTKAKCLARQ ELVIGGFTDP EGSRQGIGAL LVGFHEGGAL
260 270 280 290 300
RFAGKVGTGF TQASARALRA RLDRLGRADP PFTPRPPGAL GRIAHWVRPE
310 320 330 340 350
LVAEVAFTEW TDDGKVRHPS FQGLREDKRA ADVVREVPGG APPAPPVPPA
360 370 380 390 400
PAPAPAAAGR ARRRAAAGAA GEVVIGGVRL SHPERTVFPG DGRAALTKAD
410 420 430 440 450
VARYYDAVAG AMVPHLRGRP LTLFHCPEGI AGECRFMKHS KTWAPPAVRR
460 470 480 490 500
VRIQEKTKLG EYLIADDRAA LLALVQMDVL ELHTWNSTVE ALEQPDRIVL
510 520 530 540 550
DLDPGPEVPW REVVRAARLL RSALEALGLA AFVKTTGGAG LHVVTPLVPR
560 570 580 590 600
RRWEDCLAFA RGLAATVARH EPRAFTVALA RAGRERKILL DYLRNNRTNT
610 620 630 640 650
SVAAFSLRAR PGAPASVPVA WDELGPRLRP ERLDARTVPR RLARLGADPW
660 670 680
AGWARAARPL GDAHLAAVGA APVDQPARGG GRR
Length:683
Mass (Da):73,439
Last modified:March 3, 2009 - v1
Checksum:iA6A123DCC5FC6ECB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001359 Genomic DNA. Translation: ACL64188.1.
RefSeqiWP_012632204.1. NC_011891.1.
YP_002491254.1. NC_011891.1.

Genome annotation databases

EnsemblBacteriaiACL64188; ACL64188; A2cp1_0836.
GeneIDi7299385.
KEGGiacp:A2cp1_0836.
PATRICi20908526. VBIAnaDeh28364_0865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001359 Genomic DNA. Translation: ACL64188.1.
RefSeqiWP_012632204.1. NC_011891.1.
YP_002491254.1. NC_011891.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi455488.A2cp1_0836.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL64188; ACL64188; A2cp1_0836.
GeneIDi7299385.
KEGGiacp:A2cp1_0836.
PATRICi20908526. VBIAnaDeh28364_0865.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiERRTHPF.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciADEH455488:GH35-841-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Anaeromyxobacter dehalogenans 2CP-1."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Beliaev A.S., Richardson P.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2CP-1 / ATCC BAA-258Imported.

Entry informationi

Entry nameiB8JDU3_ANAD2
AccessioniPrimary (citable) accession number: B8JDU3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.