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B8JDU3 (B8JDU3_ANAD2) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ACL64188.1
Gene names
Ordered Locus Names:A2cp1_0836
OrganismAnaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) [Complete proteome] [HAMAP] EMBL ACL64188.1
Taxonomic identifier455488 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Myxococcales › Cystobacterineae › Myxococcaceae › Anaeromyxobacter ›

Protein attributes

Sequence length683 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACL64188.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8JDU3 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: A6A123DCC5FC6ECB

FASTA68373,439
        10         20         30         40         50         60 
MPACPAGARR GRRLPRHAGG GELSRVARAP VPIYRAQLAT LVATPPAGDG WVHETKYDGY 

        70         80         90        100        110        120 
RIGCSLEGGR ATLWSRRGND WTAQFPEVAQ AAEALAARSA LLDGEVAAVL PGGRTSFQAL 

       130        140        150        160        170        180 
QQAFSGGRRS LAYFVFDLLW LDGEDLSGRP LLERKDALRR LLGARGAVLR YAPHVEAPGA 

       190        200        210        220        230        240 
EVLREACRLG LEGIVSKRAD APYRPGRNTT WTKAKCLARQ ELVIGGFTDP EGSRQGIGAL 

       250        260        270        280        290        300 
LVGFHEGGAL RFAGKVGTGF TQASARALRA RLDRLGRADP PFTPRPPGAL GRIAHWVRPE 

       310        320        330        340        350        360 
LVAEVAFTEW TDDGKVRHPS FQGLREDKRA ADVVREVPGG APPAPPVPPA PAPAPAAAGR 

       370        380        390        400        410        420 
ARRRAAAGAA GEVVIGGVRL SHPERTVFPG DGRAALTKAD VARYYDAVAG AMVPHLRGRP 

       430        440        450        460        470        480 
LTLFHCPEGI AGECRFMKHS KTWAPPAVRR VRIQEKTKLG EYLIADDRAA LLALVQMDVL 

       490        500        510        520        530        540 
ELHTWNSTVE ALEQPDRIVL DLDPGPEVPW REVVRAARLL RSALEALGLA AFVKTTGGAG 

       550        560        570        580        590        600 
LHVVTPLVPR RRWEDCLAFA RGLAATVARH EPRAFTVALA RAGRERKILL DYLRNNRTNT 

       610        620        630        640        650        660 
SVAAFSLRAR PGAPASVPVA WDELGPRLRP ERLDARTVPR RLARLGADPW AGWARAARPL 

       670        680 
GDAHLAAVGA APVDQPARGG GRR

« Hide

References

[1]"Complete sequence of Anaeromyxobacter dehalogenans 2CP-1."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Beliaev A.S., Richardson P.
Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 2CP-1 / ATCC BAA-258.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001359 Genomic DNA. Translation: ACL64188.1.
RefSeqYP_002491254.1. NC_011891.1.

3D structure databases

ProteinModelPortalB8JDU3.
ModBaseSearch...

Protein-protein interaction databases

STRING455488.A2cp1_0836.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL64188; ACL64188; A2cp1_0836.
GeneID7299385.
KEGGacp:A2cp1_0836.
PATRIC20908526. VBIAnaDeh28364_0865.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALKSDPWA.
ProtClustDBCLSK945253.

Enzyme and pathway databases

BioCycADEH455488:GH35-841-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8JDU3_ANAD2
AccessionPrimary (citable) accession number: B8JDU3
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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