Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B8JDU3

- B8JDU3_ANAD2

UniProt

B8JDU3 - B8JDU3_ANAD2

Protein
Submitted name:

DNA ligase D

Gene

A2cp1_0836

Organism
Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciADEH455488:GH35-841-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:A2cp1_0836Imported
    OrganismiAnaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)Imported
    Taxonomic identifieri455488 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeAnaeromyxobacteraceaeAnaeromyxobacter
    ProteomesiUP000007089: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi455488.A2cp1_0836.

    Structurei

    3D structure databases

    ProteinModelPortaliB8JDU3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiVAFTEWT.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8JDU3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPACPAGARR GRRLPRHAGG GELSRVARAP VPIYRAQLAT LVATPPAGDG    50
    WVHETKYDGY RIGCSLEGGR ATLWSRRGND WTAQFPEVAQ AAEALAARSA 100
    LLDGEVAAVL PGGRTSFQAL QQAFSGGRRS LAYFVFDLLW LDGEDLSGRP 150
    LLERKDALRR LLGARGAVLR YAPHVEAPGA EVLREACRLG LEGIVSKRAD 200
    APYRPGRNTT WTKAKCLARQ ELVIGGFTDP EGSRQGIGAL LVGFHEGGAL 250
    RFAGKVGTGF TQASARALRA RLDRLGRADP PFTPRPPGAL GRIAHWVRPE 300
    LVAEVAFTEW TDDGKVRHPS FQGLREDKRA ADVVREVPGG APPAPPVPPA 350
    PAPAPAAAGR ARRRAAAGAA GEVVIGGVRL SHPERTVFPG DGRAALTKAD 400
    VARYYDAVAG AMVPHLRGRP LTLFHCPEGI AGECRFMKHS KTWAPPAVRR 450
    VRIQEKTKLG EYLIADDRAA LLALVQMDVL ELHTWNSTVE ALEQPDRIVL 500
    DLDPGPEVPW REVVRAARLL RSALEALGLA AFVKTTGGAG LHVVTPLVPR 550
    RRWEDCLAFA RGLAATVARH EPRAFTVALA RAGRERKILL DYLRNNRTNT 600
    SVAAFSLRAR PGAPASVPVA WDELGPRLRP ERLDARTVPR RLARLGADPW 650
    AGWARAARPL GDAHLAAVGA APVDQPARGG GRR 683
    Length:683
    Mass (Da):73,439
    Last modified:March 3, 2009 - v1
    Checksum:iA6A123DCC5FC6ECB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001359 Genomic DNA. Translation: ACL64188.1.
    RefSeqiYP_002491254.1. NC_011891.1.

    Genome annotation databases

    EnsemblBacteriaiACL64188; ACL64188; A2cp1_0836.
    GeneIDi7299385.
    KEGGiacp:A2cp1_0836.
    PATRICi20908526. VBIAnaDeh28364_0865.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001359 Genomic DNA. Translation: ACL64188.1 .
    RefSeqi YP_002491254.1. NC_011891.1.

    3D structure databases

    ProteinModelPortali B8JDU3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 455488.A2cp1_0836.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACL64188 ; ACL64188 ; A2cp1_0836 .
    GeneIDi 7299385.
    KEGGi acp:A2cp1_0836.
    PATRICi 20908526. VBIAnaDeh28364_0865.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi VAFTEWT.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci ADEH455488:GH35-841-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Anaeromyxobacter dehalogenans 2CP-1."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Beliaev A.S., Richardson P.
      Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 2CP-1 / ATCC BAA-258Imported.

    Entry informationi

    Entry nameiB8JDU3_ANAD2
    AccessioniPrimary (citable) accession number: B8JDU3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3