B8I9D5 (B8I9D5_CLOCE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
L-arabinose isomerase EMBL ACL75395.1

Gene names

Ordered Locus Names:

Ccel_1033

Organism

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) [Complete proteome] [HAMAP]

Taxonomic identifier

394503 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	465 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the conversion of L-arabinose to L-ribulose By similarity. SAAS SAAS003762
Catalytic activity	L-arabinose = L-ribulose. SAAS SAAS003762
Cofactor	Binds 1 manganese ion per subunit By similarity. SAAS SAAS003762
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. SAAS SAAS003762

Ontologies

Keywords
Biological process	Arabinose catabolism SAAS SAAS003762 Carbohydrate metabolism
Ligand	Manganese SAAS SAAS003762 Metal-binding SAAS SAAS003762
Molecular function	Isomerase SAAS SAAS003762 EMBL ACL75395.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arabinose catabolic process Inferred from electronic annotation. Source: UniProtKB-KW fucose metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	L-arabinose isomerase activity Inferred from electronic annotation. Source: InterPro L-fucose isomerase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8I9D5 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 5131F270B6798315	FASTA	465	52,561
	10 20 30 40 50 60 MITKQKPRIG FLGLMQGLYD ESQPELPKMQ EAFAREVVEQ LKDVADIDFP GPAKEREDIE 70 80 90 100 110 120 RYVKYFNDKE YDGIMIVNLL YSPGNRLIQA MKNNNLPILL ANIQPLPDVT SNWDWILCTT 130 140 150 160 170 180 NQGIHGIQDT SNVLMRCGIK PAIITDDWKA ESFKAYFEDW ALAANTHNRL KKTKVAIFGR 190 200 210 220 230 240 MHNMGDILGD DAALCRKFGV EANHVTIGPV YYNMEGLSDK EVDAQIEEDK KNFKIDPNLP 250 260 270 280 290 300 EESHRYAARM QLAFEKFLND NGYEGFSQFF NIYKEDGRFK QIPILAGSSL LAKGYGYSAE 310 320 330 340 350 360 GDTNVLLMTV IGHMMIGDPH FTEMYSLDFG KDSAMLSHMG EGNWKVARKD RGVTLIDRPL 370 380 390 400 410 420 DIGGLGNPPT PKFNVEPGTA TLVSLVAVEG EKYQLIVSKG TILDTEDLPD VPMNHAFFRP 430 440 450 460 DSGIKKAMDE WLANGGTHHE VLFLGDFRRR FELLCKILDI KYIEV

References

[1]

"Complete sequence of Clostridium cellulolyticum H10." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Saunders E., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N. , Ivanova N., Zhou J., Richardson P. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35319 / DSM 5812 / JCM 6584 / H10.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001348 Genomic DNA. Translation: ACL75395.1.
RefSeq	YP_002505375.1. NC_011898.1.
3D structure databases
ProteinModelPortal	B8I9D5.
ModBase	Search...
Protein-protein interaction databases
STRING	B8I9D5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7309855.
GenomeReviews	Gene locus Ccel_1033 in contig CP001348_GR.
KEGG	cce:Ccel_1033.
PATRIC	19432887. VBICloCel57783_1066.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	EVCPTIA.
ProtClustDB	CLSK2806062.
Family and domain databases
InterPro	IPR024664. Ara_Isoase_C. IPR004216. Fuc/Ara_isomerase_C. IPR009015. Fucose_isomerase_N/cen. IPR003762. Lara_isomerase. [Graphical view]
KO	K01804.
Pfam	PF11762. Arabinose_Iso_C. 1 hit. PF02610. Arabinose_Isome. 1 hit. [Graphical view]
ProDom	PD018364. Lara_isomerase. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50443. Fuc_isomerase_C. 1 hit. SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8I9D5_CLOCE

Accession

Primary (citable) accession number: B8I9D5

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)