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Protein
Submitted name:

Carbohydrate binding family 6

Gene

Ccel_1239

Organism
Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseSAAS annotation, Hydrolase

Protein family/group databases

CAZyiCBM6. Carbohydrate-Binding Module Family 6.
GH2. Glycoside Hydrolase Family 2.

Names & Taxonomyi

Protein namesi
Submitted name:
Carbohydrate binding family 6Imported
Gene namesi
Ordered Locus Names:Ccel_1239Imported
OrganismiClostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10)Imported
Taxonomic identifieri394503 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium
Proteomesi
  • UP000001349 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 29Sequence analysisAdd BLAST29
ChainiPRO_500287388130 – 1015Sequence analysisAdd BLAST986

Interactioni

Protein-protein interaction databases

STRINGi394503.Ccel_1239.

Structurei

3D structure databases

ProteinModelPortaliB8I0M0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini820 – 943CBM6 (carbohydrate binding type-6)InterPro annotationAdd BLAST124
Domaini946 – 1012DockerinInterPro annotationAdd BLAST67

Sequence similaritiesi

Belongs to the glycosyl hydrolase 2 family.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105CNT. Bacteria.
COG3250. LUCA.
HOGENOMiHOG000022809.
KOiK01190.
OMAiYMETEIY.
OrthoDBiPOG091H0F66.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
2.60.120.260. 2 hits.
2.60.40.320. 1 hit.
2.60.40.920. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR003344. Big_1_dom.
IPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR016134. Dockerin_dom.
IPR032311. DUF4982.
IPR018247. EF_Hand_1_Ca_BS.
IPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006103. Glyco_hydro_2_cat.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF16355. DUF4982. 1 hit.
PF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]
PRINTSiPR00132. GLHYDRLASE2.
SMARTiSM00606. CBD_IV. 1 hit.
[Graphical view]
SUPFAMiSSF49303. SSF49303. 1 hit.
SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
SSF63446. SSF63446. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8I0M0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRKKILCIF LVTVLMLTIL PIPQQTVMAD TGVLKELKGT DIYNGLRGLN
60 70 80 90 100
FNEGWKFNKG DVSNGQSTGY NDSGWSGVTL PHDWSIYNTF NKSSAAGAGG
110 120 130 140 150
GYLDGGIGWY RKTFTVPSDY TGKKVFIEFD GAYMNSQVWI NGTLLGTRPY
160 170 180 190 200
GYSSFEYDLT PYLNIGGSNV IAVRLNNNQP TSRWYSGSGI YRNVWLTVLD
210 220 230 240 250
PVHVTYCGMF VTTPTVSSSS ATANVSTKVL NQGSTAKSVS LKTTITDAEG
260 270 280 290 300
NVVATNTSSV ASIAGSGSNT FSQNLTVSNP HLWSPASPYL YAVQTQVIVD
310 320 330 340 350
GNVTDTYSST LGIRYFSFSS TSGFSLNGVN MKINGVCLHH DLGSLGAAVN
360 370 380 390 400
YRAIERELQI MKDMGCNAIR TSHNPPDPQM LEICDRLGLM VMDEAFDCWE
410 420 430 440 450
TGKNSNDYHL YFNNWAQTDL QAMVTRDRNH PSIIMYSIGN EIPSPSVATA
460 470 480 490 500
TKLKNWVKDV DNTRPVTLGT FAVSMGDATP QAVASVLDLV GYNYFPYMYD
510 520 530 540 550
GGHNNHPEWK MFGSETSSAV RSRGVYKTPT NKNILTDSDN QCSSYDNSVV
560 570 580 590 600
SWGNSAESSY NEINKRNYMA GEFIWTGFDY IGEPTPYEWP AKSSYFGIVD
610 620 630 640 650
TCGFPKDIYY FYQSKWSTKP MVHILPHWNW STGTNVEVWA YSNCDTVELF
660 670 680 690 700
LNGKSLGSKS VGTAGHLSWS VPWSSGTLRA KGTKGGTVVY DEVVTAGTPS
710 720 730 740 750
KVLLKPDRTS VKADGKDLIY IETDIADGNN VTVPTADNTV NFSISGPGVI
760 770 780 790 800
VGVDNGNPIS TEAYKGSSRK AFNGKCLVIV QPTKVNGTIV VTASSNGLSS
810 820 830 840 850
GSVSIASTGG AEAPIVSAYK KIEAENYDNQ SGIQTEACSE GGQDVGFIEN
860 870 880 890 900
GDYTVYNNVD FGSGAESFTA RAASATSGGN IEIRLDSPNG TLIGTCPVAG
910 920 930 940 950
TGDWQTYADV NCSVSEVSGK HDLYLKFTGD SGYLFNINWF TFTARNSAKL
960 970 980 990 1000
GDLNSDDQID AMDFQLMKKY LLGLGEIKDT KLADLDASGT IDVLDLMLLK
1010
QYLLGTITSF PGQGT
Length:1,015
Mass (Da):109,949
Last modified:March 3, 2009 - v1
Checksum:iB030E265201858FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001348 Genomic DNA. Translation: ACL75595.1.
RefSeqiWP_015924744.1. NC_011898.1.

Genome annotation databases

EnsemblBacteriaiACL75595; ACL75595; Ccel_1239.
KEGGicce:Ccel_1239.
PATRICi19433313. VBICloCel57783_1279.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001348 Genomic DNA. Translation: ACL75595.1.
RefSeqiWP_015924744.1. NC_011898.1.

3D structure databases

ProteinModelPortaliB8I0M0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394503.Ccel_1239.

Protein family/group databases

CAZyiCBM6. Carbohydrate-Binding Module Family 6.
GH2. Glycoside Hydrolase Family 2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL75595; ACL75595; Ccel_1239.
KEGGicce:Ccel_1239.
PATRICi19433313. VBICloCel57783_1279.

Phylogenomic databases

eggNOGiENOG4105CNT. Bacteria.
COG3250. LUCA.
HOGENOMiHOG000022809.
KOiK01190.
OMAiYMETEIY.
OrthoDBiPOG091H0F66.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
2.60.120.260. 2 hits.
2.60.40.320. 1 hit.
2.60.40.920. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR003344. Big_1_dom.
IPR006584. Cellulose-bd_IV.
IPR005084. CMB_fam6.
IPR016134. Dockerin_dom.
IPR032311. DUF4982.
IPR018247. EF_Hand_1_Ca_BS.
IPR008979. Galactose-bd-like.
IPR006101. Glyco_hydro_2.
IPR013812. Glyco_hydro_2/20_Ig-like.
IPR006103. Glyco_hydro_2_cat.
IPR006102. Glyco_hydro_2_Ig-like.
IPR006104. Glyco_hydro_2_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF03422. CBM_6. 1 hit.
PF16355. DUF4982. 1 hit.
PF00703. Glyco_hydro_2. 1 hit.
PF02836. Glyco_hydro_2_C. 1 hit.
PF02837. Glyco_hydro_2_N. 1 hit.
[Graphical view]
PRINTSiPR00132. GLHYDRLASE2.
SMARTiSM00606. CBD_IV. 1 hit.
[Graphical view]
SUPFAMiSSF49303. SSF49303. 1 hit.
SSF49785. SSF49785. 2 hits.
SSF51445. SSF51445. 1 hit.
SSF63446. SSF63446. 1 hit.
PROSITEiPS51175. CBM6. 1 hit.
PS51766. DOCKERIN. 1 hit.
PS00018. EF_HAND_1. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB8I0M0_CLOCE
AccessioniPrimary (citable) accession number: B8I0M0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: November 2, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.