B8HRG7 (B8HRG7_CYAP4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma 70 subunit, RpoD subfamily EMBL ACL44155.1

Gene names

Ordered Locus Names:

Cyan7425_1788

Organism

Cyanothece sp. (strain PCC 7425 / ATCC 29141) [Complete proteome] [HAMAP] EMBL ACL44155.1

Taxonomic identifier

395961 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Cyanothece

Protein attributes

Sequence length	455 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8HRG7 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 5C789F121E4060E3	FASTA	455	51,830
	10 20 30 40 50 60 MHLYLTLHMV GTMSAIPYYD AMDDDERSGA ESRHSGPRSE DDSVLEEDSL ETLAEPGELD 70 80 90 100 110 120 LLVEANGLEA NGDGSLLEDW PEEDVEEAVQ LAGRGQRTTD LVRLYLQEIG RVRLLGRDEE 130 140 150 160 170 180 VSEAQKVQRY MRLVELRDQV QADHQPIQQY VHLIDIHDRL AAQLGHRPPL ERWAREAGVV 190 200 210 220 230 240 AGQLKTLLAE GKQAWATAIG MMVGELDQIQ KEGVRAKEHM IQANLRLVVS VAKKYQNRGL 250 260 270 280 290 300 ELLDLIQEGT LGLERAVEKF DPTKGYRFST YAYWWIRQGI TRAIATQSRT IRLPVHITEK 310 320 330 340 350 360 LNKIKKAQRK ISQEKGHTPS IEDIATELEM TVPQVRELLV RVPRSVSLET KVGKDKDTEL 370 380 390 400 410 420 GDLLETDDLS PEEMMMRESL HRELEKLLAD LTSRERDVIS MRFGLGDGHA YSLADIGRAL 430 440 450 DLSRERVRQI EAKALQKLRQ PKRRNRVRDY LDSLA

References

[1]

"Complete sequence of chromosome Cyanothece sp. PCC 7425." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Meineke L., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N. , Ovchinnikova G., Liberton M., Stoeckel J., Banerjee A., Singh A., Page L., Sato H., Zhao L., Sherman L., Pakrasi H.B., Richardson P. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PCC 7425 / ATCC 29141.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001344 Genomic DNA. Translation: ACL44155.1.
RefSeq	YP_002482516.1. NC_011884.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B8HRG7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7287712.
GenomeReviews	Gene locus Cyan7425_1788 in contig CP001344_GR.
KEGG	cyn:Cyan7425_1788.
PATRIC	21564531. VBICyaSp30657_1785.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG745096.
OMA	KVGKDKD.
PhylomeDB	B8HRG7.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8HRG7_CYAP4

Accession

Primary (citable) accession number: B8HRG7

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	January 25, 2012
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)