B8HA95 (B8HA95_ARTCA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribosome maturation factor rimM HAMAP MF_00014

Gene names

Name:	rimM HAMAP MF_00014
Ordered Locus Names:	Achl_2221

Organism

Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) [Complete proteome] [HAMAP]

Taxonomic identifier

452863 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micrococcineae › Micrococcaceae › Arthrobacter

Protein attributes

Sequence length	181 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014
Subunit structure	Binds ribosomal protein S19 By similarity. HAMAP MF_00014
Subcellular location	Cytoplasm By similarity HAMAP MF_00014.
Domain	The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014
Sequence similarities	Belongs to the rimM family. HAMAP MF_00014 Contains 1 PRC barrel domain. HAMAP MF_00014

Ontologies

Keywords
Biological process	Ribosome biogenesis HAMAP MF_00014
Cellular component	Cytoplasm HAMAP MF_00014
Molecular function	Chaperone HAMAP MF_00014
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rRNA processing Inferred from electronic annotation. Source: InterPro ribosomal small subunit biogenesis Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: InterPro
Molecular function	ribosome binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	91 – 164	74	PRC barrel By similarity HAMAP MF_00014

Sequences

	Sequence		Length	Mass (Da)
	B8HA95 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: F28773E9AC55CA0C	FASTA	181	19,580
	10 20 30 40 50 60 MQLQVARIGK PHGIRGEVTV QVMTDAPGDR FVPGVEFVVE PAQSGPLTVS SARWNKDILL 70 80 90 100 110 120 LAFEEIEDRN QAETLRGAKL FIETAELDED DEDGWYEHEL VGLEARVGST VVGKVTALNT 130 140 150 160 170 180 APAQDLLMVT TPDGEEILIP FVEQIVPEVN VGEGYILLTP PDGLFEVNSG EAAPSEPEGT D

References

[1]

"Complete sequence of chromosome of Arthrobacter chlorophenolicus A6." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D., Goodwin L., Pitluck S., Goltsman E., Clum A., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Jansson J., Richardson P. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: A6 / ATCC 700700 / DSM 12829 / JCM 12360.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001341 Genomic DNA. Translation: ACL40187.1.
RefSeq	YP_002488276.1. NC_011886.1.
3D structure databases
ProteinModelPortal	B8HA95.
ModBase	Search...
Protein-protein interaction databases
STRING	B8HA95.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7293689.
GenomeReviews	Gene locus Achl_2221 in contig CP001341_GR.
KEGG	ach:Achl_2221.
PATRIC	20991053. VBIArtChl38304_2902.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG703775.
OMA	PDEFYDH.
ProtClustDB	PRK00122.
Family and domain databases
HAMAP	MF_00014. Ribosome_mat_RimM. [Tree]
InterPro	IPR011961. 16S_RimM. IPR011033. PRC_barrell-like. IPR002676. RimM. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Gene3D	G3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KO	K02860.
Pfam	PF01782. RimM. 1 hit. [Graphical view]
SUPFAM	SSF50346. PRCH_cytoplasmic. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR02273. 16S_RimM. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8HA95_ARTCA

Accession

Primary (citable) accession number: B8HA95

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)