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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

CCNA_03725

Organism
Caulobacter crescentus (strain NA1000 / CB15N)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciCAULONA1000:CCNA_03725-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:CCNA_03725Imported
OrganismiCaulobacter crescentus (strain NA1000 / CB15N)Imported
Taxonomic identifieri565050 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeCaulobacter
ProteomesiUP000001364: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi190650.CC_3610.

Structurei

3D structure databases

ProteinModelPortaliB8H6C9.
SMRiB8H6C9. Positions 1-541.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8H6C9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSMRAFAHLL DRLSLTSSRN AKLILIQDHL RQTPDPDRGY ALAALTGALS
60 70 80 90 100
FNAAKPAFIR KAIEARMDPQ LFAWSYDFVG DLAETVSLVW PAPSSRKWLG
110 120 130 140 150
ANRPPELSEV IDALHSASRP EVQRLIEGWL DALDPDGRWA LLKLMTGGLR
160 170 180 190 200
VGVSSRLAKQ ACANLGGVDI GEIEEIWHAL APPYGDLFAW LEGRSERPSP
210 220 230 240 250
DAPGRFRPVM LAQPLDEEVD FQKLDPADYL AEWKWDGIRV QAVSERGERR
260 270 280 290 300
LYTRTGDDIS ASFPDVVEAL DFEGAIDGEL LVLRDGALAS FGDLQQRLNR
310 320 330 340 350
KTVDAKLLAA FPAGIRAYDL LMDGETDLRA LPFETRRARL EAFVASLKTS
360 370 380 390 400
RIDLSPLQPF STWKALAALR LEPPEGDARL SEGLMLKRRD SVYEPGRPKG
410 420 430 440 450
PWFKWKRDPR LIDAVLMYAQ RGHGKRSSFY SDYTFGVWRE DEDGRRTLTP
460 470 480 490 500
VGKAYFGFTD EELKQIDKFV RDHTIERFGP VRSVRADADV GLIFEVAFEG
510 520 530 540
LQRSSRHKSG VAMRFPRINR IRWDKPAREA DELATLEAML D
Length:541
Mass (Da):60,931
Last modified:March 3, 2009 - v1
Checksum:iBFF639018FC65030
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001340 Genomic DNA. Translation: ACL97190.1.
RefSeqiWP_010921437.1. NC_011916.1.
YP_002519098.1. NC_011916.1.

Genome annotation databases

EnsemblBacteriaiACL97190; ACL97190; CCNA_03725.
GeneIDi7331921.
KEGGiccs:CCNA_03725.
PATRICi21311939. VBICauCre52860_3631.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001340 Genomic DNA. Translation: ACL97190.1.
RefSeqiWP_010921437.1. NC_011916.1.
YP_002519098.1. NC_011916.1.

3D structure databases

ProteinModelPortaliB8H6C9.
SMRiB8H6C9. Positions 1-541.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190650.CC_3610.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL97190; ACL97190; CCNA_03725.
GeneIDi7331921.
KEGGiccs:CCNA_03725.
PATRICi21311939. VBICauCre52860_3631.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciCAULONA1000:CCNA_03725-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genetic basis of laboratory adaptation in Caulobacter crescentus."
    Marks M.E., Castro-Rojas C.M., Teiling C., Du L., Kapatral V., Walunas T.L., Crosson S.
    J. Bacteriol. 192:3678-3688(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NA1000 / CB15NImported.

Entry informationi

Entry nameiB8H6C9_CAUCN
AccessioniPrimary (citable) accession number: B8H6C9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: February 4, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.