B8GKN7 (B8GKN7_METPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pyruvoyl-dependent arginine decarboxylase HAMAP MF_01404
Short name=PvlArgDC HAMAP MF_01404
EC=4.1.1.19 HAMAP MF_01404

Gene names

Name:	pdaD HAMAP MF_01404
Ordered Locus Names:	Mpal_1878

Organism

Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) [Complete proteome] [HAMAP]

Taxonomic identifier

521011 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanomicrobiales › Genera incertae sedis › Methanosphaerula

Protein attributes

Sequence length	180 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. HAMAP MF_01404
Cofactor	Pyruvoyl group By similarity. HAMAP MF_01404
Sequence similarities	Belongs to the pdaD family. HAMAP MF_01404

Ontologies

Keywords
Ligand	Pyruvate HAMAP MF_01404
Molecular function	Decarboxylase HAMAP MF_01404 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Site	41 – 42	2	Cleavage (non-hydrolytic) By similarity HAMAP MF_01404
Amino acid modifications
	Modified residue	42	1	Pyruvic acid (Ser) By similarity HAMAP MF_01404

Sequences

	Sequence		Length	Mass (Da)
	B8GKN7 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: FE44084BF2202E6C	FASTA	180	19,768
	10 20 30 40 50 60 MVVPTKIFFT KGVGVHKDRL ASFELALRKA GIERCNLVYV SSIFPPYCTE IPCGEGLEML 70 80 90 100 110 120 QAGEIVYCVM ARNETNEPNR LVSAAIGLAL PKDADEYGYL SEHHAFGESA AISGEYAEDL 130 140 150 160 170 180 AATMLATTLG IEFDPNRAWQ EREQIYKASG KIIETKQICQ TAQGEKNGLW TTVIAVAVFQ

References

[1]

"Complete sequence of Candidatus Methanosphaerula E1-9c." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Lu M., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G.O., Zinder S. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1556 / DSM 19958 / E1-9c.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001338 Genomic DNA. Translation: ACL17183.1.
RefSeq	YP_002466906.1. NC_011832.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B8GKN7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7272695.
GenomeReviews	Gene locus Mpal_1878 in contig CP001338_GR.
KEGG	mpl:Mpal_1878.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG539680.
OMA	YKMSGKI.
ProtClustDB	PRK01285.
Family and domain databases
HAMAP	MF_01404. PvlArgDC. [Tree]
InterPro	IPR016104. Pyr-dep_his/arg-deCO2ase. IPR016105. Pyr-dep_his/arg-deCO2ase_sand. IPR002724. Pyruvoyl-dep_arg_deCO2ase. [Graphical view]
Gene3D	G3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
KO	K02626.
Pfam	PF01862. PvlArgDC. 1 hit. [Graphical view]
PIRSF	PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDom	PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF56271. His_carbxylase. 1 hit.
TIGRFAMs	TIGR00286. TIGR00286. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8GKN7_METPE

Accession

Primary (citable) accession number: B8GKN7

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	November 16, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)