B8GJ70 (B8GJ70_METPE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197

Gene names

Name:	dapF HAMAP MF_00197
Ordered Locus Names:	Mpal_0259

Organism

Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) [Complete proteome] [HAMAP]

Taxonomic identifier

521011 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanomicrobiales › Genera incertae sedis › Methanosphaerula

Protein attributes

Sequence length	277 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197
Subcellular location	Cytoplasm By similarity HAMAP MF_00197.
Sequence similarities	Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis HAMAP MF_00197
Cellular component	Cytoplasm HAMAP MF_00197
Molecular function	Isomerase HAMAP MF_00197 EMBL ACL15643.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	81	1	By similarity HAMAP MF_00197
	Active site	223	1	By similarity HAMAP MF_00197

Sequences

	Sequence		Length	Mass (Da)
	B8GJ70 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 831C0E07E25333B5	FASTA	277	29,432
	10 20 30 40 50 60 MVYTTISIPF CKLHGNGNDF LLIDELEGTR IPDQMKGEFA ELYCDRRFGV GADGVLFLSA 70 80 90 100 110 120 GTEGDLRMRI FQPDRSEAEM CGNGIRCFAR YAFDQGYFTE TCNVETPAGV LPVHVSIGDS 130 140 150 160 170 180 TFLAQIHMPD PAFDCPGIPA TGEGVYQQTI AGLTVHATNT GVPHAVVIVD DLAAVDVPGL 190 200 210 220 230 240 APQIRHHPSF LKGANVNFVQ VTGPDAISVR TFERGVEDET LCCGTGATAS AAVAHRLGLV 250 260 270 GDHVAVETAG GPLWITLGKE TLMEGPAVTV FVGEIPL

References

[1]

"Complete sequence of Candidatus Methanosphaerula E1-9c." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Lu M., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G.O., Zinder S. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1556 / DSM 19958 / E1-9c.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001338 Genomic DNA. Translation: ACL15643.1.
RefSeq	YP_002465366.1. NC_011832.1.
3D structure databases
ProteinModelPortal	B8GJ70.
ModBase	Search...
Protein-protein interaction databases
STRING	B8GJ70.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7270645.
GenomeReviews	Gene locus Mpal_0259 in contig CP001338_GR.
KEGG	mpl:Mpal_0259.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG399442.
OMA	FMTGPAT.
ProtClustDB	PRK00450.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8GJ70_METPE

Accession

Primary (citable) accession number: B8GJ70

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	November 16, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)