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Protein

30S ribosomal protein S27e

Gene

rps27e

Organism
Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri17 – 3923C4-typeUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciMPAL521011:GI2F-981-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S27eUniRule annotation
Gene namesi
Name:rps27eUniRule annotation
Ordered Locus Names:Mpal_0956
OrganismiMethanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
Taxonomic identifieri521011 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanomicrobialesMethanoregulaceaeMethanosphaerula
Proteomesi
  • UP000002457 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 626230S ribosomal protein S27ePRO_1000194307Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi521011.Mpal_0956.

Structurei

3D structure databases

ProteinModelPortaliB8GGQ3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S27e family.UniRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri17 – 3923C4-typeUniRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiarCOG04108. Archaea.
COG2051. LUCA.
HOGENOMiHOG000224976.
KOiK02978.
OMAiQIVFSHP.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.

Sequencei

Sequence statusi: Complete.

B8GGQ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRLYRENRS KFYRVKCPDC ENEQIIFEKA STVVDCVVCG HVLAEPRGGR
60
AALKAEILAE LE
Length:62
Mass (Da):7,055
Last modified:March 3, 2009 - v1
Checksum:i68354FE113A32C1B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001338 Genomic DNA. Translation: ACL16308.1.
RefSeqiWP_012617627.1. NC_011832.1.

Genome annotation databases

EnsemblBacteriaiACL16308; ACL16308; Mpal_0956.
GeneIDi7272449.
KEGGimpl:Mpal_0956.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001338 Genomic DNA. Translation: ACL16308.1.
RefSeqiWP_012617627.1. NC_011832.1.

3D structure databases

ProteinModelPortaliB8GGQ3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi521011.Mpal_0956.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL16308; ACL16308; Mpal_0956.
GeneIDi7272449.
KEGGimpl:Mpal_0956.

Phylogenomic databases

eggNOGiarCOG04108. Archaea.
COG2051. LUCA.
HOGENOMiHOG000224976.
KOiK02978.
OMAiQIVFSHP.

Enzyme and pathway databases

BioCyciMPAL521011:GI2F-981-MONOMER.

Family and domain databases

Gene3Di2.20.25.100. 1 hit.
HAMAPiMF_00371. Ribosomal_S27e. 1 hit.
InterProiIPR000592. Ribosomal_S27e.
IPR023407. Ribosomal_S27e_Zn-bd_dom.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR11594. PTHR11594. 1 hit.
PfamiPF01667. Ribosomal_S27e. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS27_METPE
AccessioniPrimary (citable) accession number: B8GGQ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: November 11, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.