B8FZ85 (B8FZ85_DESHD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ACL22837.1
EC=5.1.1.1 EMBL ACL22837.1

Gene names

Ordered Locus Names:

Dhaf_4842

Organism

Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) [Complete proteome] [HAMAP] EMBL ACL22837.1

Taxonomic identifier

272564 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfitobacterium › Desulfitobacterium hafniense

Protein attributes

Sequence length	394 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ACL22837.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8FZ85 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 672BE94E94BCF915	FASTA	394	43,802
	10 20 30 40 50 60 MSDAWIDINL DAIANNYREV TQQLSPAARV MAVVKADAYG LGAVPVAQTL QKLGCPAFAV 70 80 90 100 110 120 TTVEEGLILR QHGVEGIILV LGPVSAEQMA EALTGDLQLT LSDFHMLREW ETVAAGLGIE 130 140 150 160 170 180 AKVHLKLETG MGRTGFFEKE WGELAAQLKK SPHITPVGVY THLARAAQRD RAYTRQQVES 190 200 210 220 230 240 FQRGVNLLEE QGFAGLWKHV CNSAAFLDYP DWHYDFIRTG TLLIGHIPAP AFAGKLKLQD 250 260 270 280 290 300 PWVAKARIVS LRRVPIGTFV GYQSIYRTKA ETQLAVIPVG YADGFGVQPH FVPQGVWDFI 310 320 330 340 350 360 KIVIKNFLAL CRIYIGQESV ILQGHRVPVA GKIGMQLTVL DVGNLPCETG DEVILPLRRT 370 380 390 QANPRLLRQY WSEKRLIAKR HIKEGFLQSY PEYP

References

[1]

"Complete sequence of Desulfitobacterium hafniense DCB-2." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L., Kyrpides N. , Ovchinnikova G., Madsen T., Christiansen N., Ahring B., Marsh T., Harzman C., Davis J.K., Kim S.-H., Tiedje J.M. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DCB-2 / DSM 10664.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001336 Genomic DNA. Translation: ACL22837.1.
RefSeq	YP_002461273.1. NC_011830.1.
3D structure databases
ProteinModelPortal	B8FZ85.
ModBase	Search...
Protein-protein interaction databases
STRING	272564.Dhaf_4842.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACL22837; ACL22837; Dhaf_4842.
GeneID	7261871.
KEGG	dhd:Dhaf_4842.
PATRIC	21667753. VBIDesHaf15223_5026.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
HOGENOM	HOG000031444.
KO	K01775.
OMA	DAWIDIN.
ProtClustDB	CLSK943664.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8FZ85_DESHD

Accession

Primary (citable) accession number: B8FZ85

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)