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Protein
Submitted name:

YbbR family protein

Gene

Dhaf_0833

Organism
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciDHAF272564:GCV8-858-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
YbbR family proteinImported
Gene namesi
Ordered Locus Names:Dhaf_0833Imported
OrganismiDesulfitobacterium hafniense (strain DCB-2 / DSM 10664)Imported
Taxonomic identifieri272564 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
Proteomesi
  • UP000007726 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KPUNMR-A32-118[»]
2L3UNMR-A321-409[»]
2L5NNMR-A32-119[»]
3LYWX-ray1.90A37-119[»]
ProteinModelPortaliB8FX10.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiB8FX10.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000087202.
OMAiFEIYADM.
OrthoDBiEOG606529.

Family and domain databases

InterProiIPR012505. YbbR.
[Graphical view]
PfamiPF07949. YbbR. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8FX10-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEMLQRNLG YKTISLVLAI LFWLWVTSQG NSQTLDRDPT LTLSLIAKNT
60 70 80 90 100
PANSMIMTKL PSVRVKTEGY NPSINVNELF AYVDLSGSEP GEHDYEVKVE
110 120 130 140 150
PIPNIKIVEI SPRVVTLQLD TVEERMLPVT VEVSGAPVNG KKVGETIVKP
160 170 180 190 200
SVVNVRGPSS LLGEVDKVLV ELSAAGASET LQVSRPLLFR DKNGLAIFGP
210 220 230 240 250
DPSVETITSS PTSVDIIVPI VAKELESKMV PLNATTTGTP AEGKEVRSIQ
260 270 280 290 300
VIPSGVQVYG EPEALAQFSA LSIGSVNING LSETKTYEIS SDKVSLPEGL
310 320 330 340 350
NYGSRTTFSV IVEMGSAVQD KTLYDLPIVL RNLPEDLVLE KPLPEVSVTI
360 370 380 390 400
RAYPEILNNL TKEQISLWID ATGKAVGEHT VKIYWQLPAG IEMVSIPDVT
410 420 430
YTLKAKEDPP KEPDNPGTPG NPGNPGNSNN SGNQPVV
Length:437
Mass (Da):47,143
Last modified:March 3, 2009 - v1
Checksum:iF08C3E7A38B5D3F1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001336 Genomic DNA. Translation: ACL18896.1.
RefSeqiWP_015943054.1. NC_011830.1.

Genome annotation databases

EnsemblBacteriaiACL18896; ACL18896; Dhaf_0833.
KEGGidhd:Dhaf_0833.
PATRICi21659347. VBIDesHaf15223_0875.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001336 Genomic DNA. Translation: ACL18896.1.
RefSeqiWP_015943054.1. NC_011830.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2KPUNMR-A32-118[»]
2L3UNMR-A321-409[»]
2L5NNMR-A32-119[»]
3LYWX-ray1.90A37-119[»]
ProteinModelPortaliB8FX10.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL18896; ACL18896; Dhaf_0833.
KEGGidhd:Dhaf_0833.
PATRICi21659347. VBIDesHaf15223_0875.

Phylogenomic databases

HOGENOMiHOG000087202.
OMAiFEIYADM.
OrthoDBiEOG606529.

Enzyme and pathway databases

BioCyciDHAF272564:GCV8-858-MONOMER.

Miscellaneous databases

EvolutionaryTraceiB8FX10.

Family and domain databases

InterProiIPR012505. YbbR.
[Graphical view]
PfamiPF07949. YbbR. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Crystal structure of YbbR family protein Dhaf_0833 from Desulfitobacterium hafniense DCB-2. Northeast Structural Genomics Consortium target id DhR29B."
    Seetharaman J., Lew S., Wang D., Janjua H., Cunningham K., Owens L., Xiao R., Liu J., Baran M.C., Acton T.B., Montelione G.T., Hunt J.F., Tong L.
    Submitted (FEB-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 37-119.
  2. "Structures of domains I and IV from YbbR are representative of a widely distributed protein family."
    Barb A.W., Cort J.R., Seetharaman J., Lew S., Lee H.W., Acton T., Xiao R., Kennedy M.A., Tong L., Montelione G.T., Prestegard J.H.
    Protein Sci. 20:396-405(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 321-409.
  3. "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction."
    Kim S.H., Harzman C., Davis J.K., Hutcheson R., Broderick J.B., Marsh T.L., Tiedje J.M.
    BMC Microbiol. 12:21-21(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DCB-2 / DSM 10664Imported.

Entry informationi

Entry nameiB8FX10_DESHD
AccessioniPrimary (citable) accession number: B8FX10
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: December 9, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.