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Protein
Submitted name:

DNA ligase D

Gene

Dhaf_0568

Organism
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDHAF272564:GCV8-591-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Dhaf_0568Imported
OrganismiDesulfitobacterium hafniense (strain DCB-2 / DSM 10664)Imported
Taxonomic identifieri272564 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
ProteomesiUP000007726 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272564.Dhaf_0568.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8FUY8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRSKLNQYNQ KRNFTRTLEP EGITEMPQEG LRFVVQHHLA RRDHYDLRLE
60 70 80 90 100
WDGAMLSWAV PKGPSYNTRD KRLAVQVEDH PLEYRHFEGT IPKGEYGGGV
110 120 130 140 150
VMLWDEGFWE PYVDVDGGLH EGMLKFVLKG RRLKGRWALV RMKGKAGDKK
160 170 180 190 200
DNWLLLKEKD DYVQTADGIS QFITSIRTGR TMTEIEEGEE EKFTRNPFSS
210 220 230 240 250
TEVQLAKLVR HLPEGEGWLY ELKYDGYRIV AYLEGHRVRL MTRNGHDYTE
260 270 280 290 300
RFQDVASSLA DWAEGRAMIL DGEMAITDPE GKTDFQALQN YLKNPRTKNL
310 320 330 340 350
TYILFDLLAL DGADLRGHPL IHRKETLAAL LENAPPNLHY SRHVRGKGEE
360 370 380 390 400
SFRAACEAGM EGIIGKKADA LYSGTRNGDW IKLKCDQRQE FIIVGYTLSQ
410 420 430 440 450
KRISGISSLL LGIYEGRELV YAGRAGTGLK ESDMEELEEK FKDIRRSSAP
460 470 480 490 500
FKPAPKPRAN ERITWVEPEL VVEVKFADWT EENLLRQASF KGLRADKNPR
510 520 530 540 550
EIRRERADEE KDDGELQLQP PAPERKSLMK INTNSMIIEG IKISSPDKVI
560 570 580 590 600
FTDPEITKVD MIRYYAKVAE RMLPYVSRRI LSIVRCPKGV AQTCFYKKHP
610 620 630 640 650
GPGSQGVVTI PILTSDGTTE DYFYIENPSG LIAEAQMGTL EFHIWGSRVD
660 670 680 690 700
ELEKPDLMVF DLDPDEGMEL GTVRQGVRDL KTILAELSLN SYLKTSGGKG
710 720 730 740 750
YHVVVPLKPA VSWGVFHDFA QGVAQVMEQK WPDRYTSNVR KAKRTNRIFI
760 770 780 790 800
DWIRNGRGAT SIAPYSLRAR RGAKVSMPIT WEELDTVAPD GVDMAEALRR
810
IQDSDPWEGF FRNQQRLQ
Length:818
Mass (Da):93,510
Last modified:March 3, 2009 - v1
Checksum:i13022B7E0FB5D16B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001336 Genomic DNA. Translation: ACL18634.1.
RefSeqiWP_015942845.1. NC_011830.1.
YP_002457070.1. NC_011830.1.

Genome annotation databases

EnsemblBacteriaiACL18634; ACL18634; Dhaf_0568.
KEGGidhd:Dhaf_0568.
PATRICi21658785. VBIDesHaf15223_0596.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001336 Genomic DNA. Translation: ACL18634.1.
RefSeqiWP_015942845.1. NC_011830.1.
YP_002457070.1. NC_011830.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272564.Dhaf_0568.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL18634; ACL18634; Dhaf_0568.
KEGGidhd:Dhaf_0568.
PATRICi21658785. VBIDesHaf15223_0596.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciDHAF272564:GCV8-591-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction."
    Kim S.H., Harzman C., Davis J.K., Hutcheson R., Broderick J.B., Marsh T.L., Tiedje J.M.
    BMC Microbiol. 12:21-21(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DCB-2 / DSM 10664Imported.

Entry informationi

Entry nameiB8FUY8_DESHD
AccessioniPrimary (citable) accession number: B8FUY8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: April 1, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.