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B8FUY8

- B8FUY8_DESHD

UniProt

B8FUY8 - B8FUY8_DESHD

Protein
Submitted name:

DNA ligase D

Gene

Dhaf_0568

Organism
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDHAF272564:GCV8-591-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Dhaf_0568Imported
    OrganismiDesulfitobacterium hafniense (strain DCB-2 / DSM 10664)Imported
    Taxonomic identifieri272564 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
    ProteomesiUP000007726: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi272564.Dhaf_0568.

    Structurei

    3D structure databases

    ProteinModelPortaliB8FUY8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8FUY8-1 [UniParc]FASTAAdd to Basket

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    MRSKLNQYNQ KRNFTRTLEP EGITEMPQEG LRFVVQHHLA RRDHYDLRLE    50
    WDGAMLSWAV PKGPSYNTRD KRLAVQVEDH PLEYRHFEGT IPKGEYGGGV 100
    VMLWDEGFWE PYVDVDGGLH EGMLKFVLKG RRLKGRWALV RMKGKAGDKK 150
    DNWLLLKEKD DYVQTADGIS QFITSIRTGR TMTEIEEGEE EKFTRNPFSS 200
    TEVQLAKLVR HLPEGEGWLY ELKYDGYRIV AYLEGHRVRL MTRNGHDYTE 250
    RFQDVASSLA DWAEGRAMIL DGEMAITDPE GKTDFQALQN YLKNPRTKNL 300
    TYILFDLLAL DGADLRGHPL IHRKETLAAL LENAPPNLHY SRHVRGKGEE 350
    SFRAACEAGM EGIIGKKADA LYSGTRNGDW IKLKCDQRQE FIIVGYTLSQ 400
    KRISGISSLL LGIYEGRELV YAGRAGTGLK ESDMEELEEK FKDIRRSSAP 450
    FKPAPKPRAN ERITWVEPEL VVEVKFADWT EENLLRQASF KGLRADKNPR 500
    EIRRERADEE KDDGELQLQP PAPERKSLMK INTNSMIIEG IKISSPDKVI 550
    FTDPEITKVD MIRYYAKVAE RMLPYVSRRI LSIVRCPKGV AQTCFYKKHP 600
    GPGSQGVVTI PILTSDGTTE DYFYIENPSG LIAEAQMGTL EFHIWGSRVD 650
    ELEKPDLMVF DLDPDEGMEL GTVRQGVRDL KTILAELSLN SYLKTSGGKG 700
    YHVVVPLKPA VSWGVFHDFA QGVAQVMEQK WPDRYTSNVR KAKRTNRIFI 750
    DWIRNGRGAT SIAPYSLRAR RGAKVSMPIT WEELDTVAPD GVDMAEALRR 800
    IQDSDPWEGF FRNQQRLQ 818
    Length:818
    Mass (Da):93,510
    Last modified:March 3, 2009 - v1
    Checksum:i13022B7E0FB5D16B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001336 Genomic DNA. Translation: ACL18634.1.
    RefSeqiYP_002457070.1. NC_011830.1.

    Genome annotation databases

    EnsemblBacteriaiACL18634; ACL18634; Dhaf_0568.
    GeneIDi7257535.
    KEGGidhd:Dhaf_0568.
    PATRICi21658785. VBIDesHaf15223_0596.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001336 Genomic DNA. Translation: ACL18634.1 .
    RefSeqi YP_002457070.1. NC_011830.1.

    3D structure databases

    ProteinModelPortali B8FUY8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 272564.Dhaf_0568.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACL18634 ; ACL18634 ; Dhaf_0568 .
    GeneIDi 7257535.
    KEGGi dhd:Dhaf_0568.
    PATRICi 21658785. VBIDesHaf15223_0596.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci DHAF272564:GCV8-591-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction."
      Kim S.H., Harzman C., Davis J.K., Hutcheson R., Broderick J.B., Marsh T.L., Tiedje J.M.
      BMC Microbiol. 12:21-21(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DCB-2 / DSM 10664Imported.

    Entry informationi

    Entry nameiB8FUY8_DESHD
    AccessioniPrimary (citable) accession number: B8FUY8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3