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B8FUY8 (B8FUY8_DESHD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ACL18634.1
Gene names
Ordered Locus Names:Dhaf_0568
OrganismDesulfitobacterium hafniense (strain DCB-2 / DSM 10664) [Complete proteome] [HAMAP] EMBL ACL18634.1
Taxonomic identifier272564 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfitobacterium ›

Protein attributes

Sequence length818 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACL18634.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8FUY8 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 13022B7E0FB5D16B

FASTA81893,510
        10         20         30         40         50         60 
MRSKLNQYNQ KRNFTRTLEP EGITEMPQEG LRFVVQHHLA RRDHYDLRLE WDGAMLSWAV 

        70         80         90        100        110        120 
PKGPSYNTRD KRLAVQVEDH PLEYRHFEGT IPKGEYGGGV VMLWDEGFWE PYVDVDGGLH 

       130        140        150        160        170        180 
EGMLKFVLKG RRLKGRWALV RMKGKAGDKK DNWLLLKEKD DYVQTADGIS QFITSIRTGR 

       190        200        210        220        230        240 
TMTEIEEGEE EKFTRNPFSS TEVQLAKLVR HLPEGEGWLY ELKYDGYRIV AYLEGHRVRL 

       250        260        270        280        290        300 
MTRNGHDYTE RFQDVASSLA DWAEGRAMIL DGEMAITDPE GKTDFQALQN YLKNPRTKNL 

       310        320        330        340        350        360 
TYILFDLLAL DGADLRGHPL IHRKETLAAL LENAPPNLHY SRHVRGKGEE SFRAACEAGM 

       370        380        390        400        410        420 
EGIIGKKADA LYSGTRNGDW IKLKCDQRQE FIIVGYTLSQ KRISGISSLL LGIYEGRELV 

       430        440        450        460        470        480 
YAGRAGTGLK ESDMEELEEK FKDIRRSSAP FKPAPKPRAN ERITWVEPEL VVEVKFADWT 

       490        500        510        520        530        540 
EENLLRQASF KGLRADKNPR EIRRERADEE KDDGELQLQP PAPERKSLMK INTNSMIIEG 

       550        560        570        580        590        600 
IKISSPDKVI FTDPEITKVD MIRYYAKVAE RMLPYVSRRI LSIVRCPKGV AQTCFYKKHP 

       610        620        630        640        650        660 
GPGSQGVVTI PILTSDGTTE DYFYIENPSG LIAEAQMGTL EFHIWGSRVD ELEKPDLMVF 

       670        680        690        700        710        720 
DLDPDEGMEL GTVRQGVRDL KTILAELSLN SYLKTSGGKG YHVVVPLKPA VSWGVFHDFA 

       730        740        750        760        770        780 
QGVAQVMEQK WPDRYTSNVR KAKRTNRIFI DWIRNGRGAT SIAPYSLRAR RGAKVSMPIT 

       790        800        810 
WEELDTVAPD GVDMAEALRR IQDSDPWEGF FRNQQRLQ

« Hide

References

[1]"Complete sequence of Desulfitobacterium hafniense DCB-2."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Ovchinnikova G., Madsen T., Christiansen N., Ahring B., Marsh T., Harzman C., Davis J.K., Kim S.-H., Tiedje J.M.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DCB-2 / DSM 10664.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001336 Genomic DNA. Translation: ACL18634.1.
RefSeqYP_002457070.1. NC_011830.1.

3D structure databases

ProteinModelPortalB8FUY8.
ModBaseSearch...

Protein-protein interaction databases

STRING272564.Dhaf_0568.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL18634; ACL18634; Dhaf_0568.
GeneID7257535.
KEGGdhd:Dhaf_0568.
PATRIC21658785. VBIDesHaf15223_0596.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAVSMPITW.
ProtClustDBCLSK950542.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8FUY8_DESHD
AccessionPrimary (citable) accession number: B8FUY8
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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