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B8FQR6 (B8FQR6_DESHD) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Aspartate--tRNA ligase HAMAP-Rule MF_00044
EC=6.1.1.12 HAMAP-Rule MF_00044
Alternative name(s):
Aspartyl-tRNA synthetase HAMAP-Rule MF_00044
Gene names
Name:aspS HAMAP-Rule MF_00044
Ordered Locus Names:Dhaf_3586 EMBL ACL21603.1
OrganismDesulfitobacterium hafniense (strain DCB-2 / DSM 10664) [Complete proteome] [HAMAP] EMBL ACL21603.1
Taxonomic identifier272564 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Peptococcaceae › Desulfitobacterium ›

Protein attributes

Sequence length592 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp). HAMAP-Rule MF_00044 SAAS SAAS004524

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00044 SAAS SAAS004524

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00044 SAAS SAAS004524.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746 HAMAP-Rule MF_00044

Sequences

Sequence LengthMass (Da)Tools
B8FQR6 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 709E5E4C22FB2275

FASTA59266,984
        10         20         30         40         50         60 
MTLLAERTES GSLRLSHAGA VIHLLGWVQR RRDHGGVIFV DLRDRSGFVQ VVFNPDMPDF 

        70         80         90        100        110        120 
AAAERLRSEY VVAIKGKVRP RPEGATNPNL ETGEIEVVAE SLTILNGAKT PPFYIQDDVD 

       130        140        150        160        170        180 
VDEMVRLKYR YLDLRRPEMQ QVFKIRHQVT QVMRNFFDSQ GFYEIETPML IKSSPEGARD 

       190        200        210        220        230        240 
YLVPSRVHPG EFYALPQSPQ IFKQLLMVSG MEKYFQIVRC FRDEDLRADR QPEFTQLDVE 

       250        260        270        280        290        300 
MSFAEVEDIL PMMEELMARI FKETIGRDIP RPFPRMTYQE AMELYGSDKP DIRFGMEMVD 

       310        320        330        340        350        360 
VAECVKDSNF KVFTDTLAKG GRVKALCAKG CAGMPRRELD GLIQFVSIYG AKGLAYIVLA 

       370        380        390        400        410        420 
EEGIKSPIAK FFSEEQLNGL IAKLKGETGD ILFFVADKEA VVADALGHLR LELGKRLGLI 

       430        440        450        460        470        480 
PEDALNFLWV TEFPLLQWDE EDKRFVAIHH PFTSPMTEDL PLLPTEPGKV RAKAYDMVLN 

       490        500        510        520        530        540 
GTELGGGSIR IHQREVQEQM FDLLGLTPEE AKAKFGYLLD AFEYGTPPHG GIAFGLDRLI 

       550        560        570        580        590 
MLLTGKDNIR DVIAFPKTQS ASDLMIQAPS SVDEKQLKEL HIKRDILPGK TK

« Hide

References

[1]"Complete sequence of Desulfitobacterium hafniense DCB-2."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Ovchinnikova G., Madsen T., Christiansen N., Ahring B., Marsh T., Harzman C., Davis J.K., Kim S.-H., Tiedje J.M.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DCB-2 / DSM 10664.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001336 Genomic DNA. Translation: ACL21603.1.
RefSeqYP_002460039.1. NC_011830.1.

3D structure databases

ProteinModelPortalB8FQR6.
SMRB8FQR6. Positions 7-584.
ModBaseSearch...

Protein-protein interaction databases

STRING272564.Dhaf_3586.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL21603; ACL21603; Dhaf_3586.
GeneID7260604.
KEGGdhd:Dhaf_3586.
PATRIC21665147. VBIDesHaf15223_3732.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0173.
HOGENOMHOG000275160.
KOK01876.
OMAQEWAKQR.
ProtClustDBPRK00476.

Enzyme and pathway databases

BioCycDHAF272564:GCV8-3660-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.1360.30. 1 hit.
HAMAPMF_00044_B. Asp_tRNA_synth_B.
InterProIPR004364. aa-tRNA-synt_II.
IPR018150. aa-tRNA-synt_II-like.
IPR006195. aa-tRNA-synth_II.
IPR004524. Asp-tRNA-ligase_IIb_bac/mt.
IPR002312. Asp/Asn-tRNA-synth_IIb.
IPR004115. GAD_dom.
IPR012340. NA-bd_OB-fold.
IPR004365. NA-bd_OB_tRNA-helicase.
[Graphical view]
PANTHERPTHR22594. PTHR22594. 1 hit.
PTHR22594:SF5. PTHR22594:SF5. 1 hit.
PfamPF02938. GAD. 1 hit.
PF00152. tRNA-synt_2. 1 hit.
PF01336. tRNA_anti. 1 hit.
[Graphical view]
PRINTSPR01042. TRNASYNTHASP.
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF55261. SSF55261. 1 hit.
TIGRFAMsTIGR00459. aspS_bact. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8FQR6_DESHD
AccessionPrimary (citable) accession number: B8FQR6
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 29, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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