B8FFK3 (B8FFK3_DESAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyridoxal-dependent decarboxylase EMBL ACL04263.1

Gene names

Ordered Locus Names:

Dalk_2570

Organism

Desulfatibacillum alkenivorans (strain AK-01) [Complete proteome] [HAMAP] EMBL ACL04263.1

Taxonomic identifier

439235 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Deltaproteobacteria › Desulfobacterales › Desulfobacteraceae › Desulfatibacillum › Desulfatibacillum alkenivorans

Protein attributes

Sequence length	549 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8FFK3 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 510C1A3169E1F287	FASTA	549	61,050
	10 20 30 40 50 60 MDRTSEAQRR ELVANRETLK RIFIMREDDS AKATLLKYME QIFFGLQDFL KDHVGITEER 70 80 90 100 110 120 SLREMASRFQ NSLISEQPEK KLADVITELV EDIAPHAVNV ASPYFVGHMT SAMPFFMVHL 130 140 150 160 170 180 AAFVAALNQN VVKLETSKIV SIVEKQLLAK IHRMIYQQDD AFYSRHIQSV DTSLGGFTED 190 200 210 220 230 240 GTLANMTALW VARNSILNQA EGFAGVEQEG MFAAYQALGI ERMVVLVSQL GHYSLRKAAG 250 260 270 280 290 300 LLGLGNKNVI GLPIDANNRV DVDALARAVK EISADPKTRI MAVVGIAGAT ETGSVDPLPR 310 320 330 340 350 360 IAEICAEHNI HFHADAAWGG PTLFSEKYKH LLEGIDMADS VTIDGHKQFY MPMTCGMVYF 370 380 390 400 410 420 KNPWAMDAIA YHSTYIARPG SVDLGIKSLA GSRASTSLIL DSALKVMGVK GYGILVEHGI 430 440 450 460 470 480 GLARQFAKEI RARENFELVT PPELNILTYR YVPARLQERL QNAEPKEAVR INQCLNALNI 490 500 510 520 530 540 VLQRDQREAG KSFVSRTTFR RPPEKGGDVV VLRTVLMNPM TRLRILKEIL DEQEQICQTK LGKAFGAIC

References

[1]

"Complete sequence of Desulfatibacillum alkenivorans AK-01." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Wawrik B., Richardson P. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AK-01.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001322 Genomic DNA. Translation: ACL04263.1.
RefSeq	YP_002431731.1. NC_011768.1.
3D structure databases
ProteinModelPortal	B8FFK3.
ModBase	Search...
Protein-protein interaction databases
STRING	439235.Dalk_2570.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACL04263; ACL04263; Dalk_2570.
GeneID	7166503.
KEGG	dal:Dalk_2570.
PATRIC	21651794. VBIDesAlk8144_2751.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000282553.
KO	K01580.
OMA	CHFHVDA.
ProtClustDB	CLSK874231.
Enzyme and pathway databases
BioCyc	DALK439235:GHP2-2596-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8FFK3_DESAA

Accession

Primary (citable) accession number: B8FFK3

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)