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Protein

Elongation factor Tu

Gene

tuf

Organism
Desulfatibacillum alkenivorans (strain AK-01)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTPUniRule annotation
Nucleotide bindingi81 – 855GTPUniRule annotation
Nucleotide bindingi136 – 1394GTPUniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotationImported

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciDALK439235:GHP2-1934-MONOMER.
DALK439235:GHP2-1946-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufUniRule annotation
Ordered Locus Names:Dalk_1917Imported, Dalk_1928Imported
OrganismiDesulfatibacillum alkenivorans (strain AK-01)Imported
Taxonomic identifieri439235 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfobacteralesDesulfobacteraceaeDesulfatibacillum
ProteomesiUP000000739 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi439235.Dalk_1928.

Structurei

3D structure databases

ProteinModelPortaliB8FET7.
SMRiB8FET7. Positions 2-396.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
KOiK02358.
OMAiHYRPQLF.
OrthoDBiEOG6R5C6X.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR031157. G_TR_CS.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR000795. TF_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. G_TR_1. 1 hit.
PS51722. G_TR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8FET7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKAKYERTK PHVNVGTIGH IDHGKTTLTA AITKTLGQKG QANFIPFDQI
60 70 80 90 100
DKAPEEKARG ITIATAHVEY ETDNRHYAHV DCPGHADYIK NMITGAAQMD
110 120 130 140 150
GAILVVGADD GPMPQTREHI LLARQVGVPR IVVFLNKCDM VDDEELIELV
160 170 180 190 200
ELELRELLDK YEFPGDDTPI IRGSALKALE ADSYEDDACK PIFELMDAID
210 220 230 240 250
SFIPEPVRDT DKPFLMPIED VFSISGRGTV VTGRVERGII RVSEEVEIVG
260 270 280 290 300
IRPTIKTVCT GVEMFRKILD EGQAGDNIGV LLRGTKREDV ERGQVVTHVG
310 320 330 340 350
KIKPYTKFKA EVYVLSKEEG GRHTPFFTGY RPQFYFRTTD VTGVVTLPEG
360 370 380 390
VEMVMPGDNV AVEAELITPI AMEKEVRFAI REGGRTVGAG VVSEIIE
Length:397
Mass (Da):43,864
Last modified:March 3, 2009 - v1
Checksum:i519FA43F1E443C54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001322 Genomic DNA. Translation: ACL03614.1.
CP001322 Genomic DNA. Translation: ACL03625.1.
RefSeqiWP_012611045.1. NC_011768.1.
YP_002431082.1. NC_011768.1.
YP_002431093.1. NC_011768.1.

Genome annotation databases

EnsemblBacteriaiACL03614; ACL03614; Dalk_1917.
ACL03625; ACL03625; Dalk_1928.
KEGGidal:Dalk_1917.
dal:Dalk_1928.
PATRICi21650358. VBIDesAlk8144_2042.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001322 Genomic DNA. Translation: ACL03614.1.
CP001322 Genomic DNA. Translation: ACL03625.1.
RefSeqiWP_012611045.1. NC_011768.1.
YP_002431082.1. NC_011768.1.
YP_002431093.1. NC_011768.1.

3D structure databases

ProteinModelPortaliB8FET7.
SMRiB8FET7. Positions 2-396.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi439235.Dalk_1928.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL03614; ACL03614; Dalk_1917.
ACL03625; ACL03625; Dalk_1928.
KEGGidal:Dalk_1917.
dal:Dalk_1928.
PATRICi21650358. VBIDesAlk8144_2042.

Phylogenomic databases

eggNOGiCOG0050.
HOGENOMiHOG000229290.
KOiK02358.
OMAiHYRPQLF.
OrthoDBiEOG6R5C6X.

Enzyme and pathway databases

BioCyciDALK439235:GHP2-1934-MONOMER.
DALK439235:GHP2-1946-MONOMER.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR031157. G_TR_CS.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR000795. TF_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. G_TR_1. 1 hit.
PS51722. G_TR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AK-01Imported.
  2. "The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation."
    Callaghan A.V., Morris B.E., Pereira I.A., McInerney M.J., Austin R.N., Groves J.T., Kukor J.J., Suflita J.M., Young L.Y., Zylstra G.J., Wawrik B.
    Environ. Microbiol. 14:101-113(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: AK-01Imported.

Entry informationi

Entry nameiB8FET7_DESAA
AccessioniPrimary (citable) accession number: B8FET7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: June 24, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.