B8FB94 (B8FB94_DESAA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Exodeoxyribonuclease V, beta subunit EMBL ACL04538.1

Gene names

Ordered Locus Names:

Dalk_2848

Organism

Desulfatibacillum alkenivorans (strain AK-01) [Complete proteome] [HAMAP]

Taxonomic identifier

439235 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfobacterales › Desulfobacteraceae › Desulfatibacillum

Protein attributes

Sequence length	1167 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 uvrD-like helicase ATP-binding domain. SAAS SAAS000212 Contains 1 uvrD-like helicase C-terminal domain. SAAS SAAS000212

Ontologies

Keywords
Biological process	DNA damage DNA repair SAAS SAAS000212
Ligand	ATP-binding Nucleotide-binding
Molecular function	Exonuclease SAAS SAAS000212 Helicase SAAS SAAS000212 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA repair Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ATP-dependent DNA helicase activity Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro exodeoxyribonuclease V activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8FB94 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: FC11F2EC2078614B	FASTA	1,167	131,548
	10 20 30 40 50 60 MTKSNEAQFA PLEGVNLIEA SAGTGKTYTL TSLYIRLLIE KGLLVDQILV VTFTVAATQE 70 80 90 100 110 120 LKDRIRNRLK IARDAFDGKE VDDDLVQAVV KEHNNPQSRL RVEDAIRRFD EAAVFTIHGF 130 140 150 160 170 180 CQRVLGENAF ESGASFDAEL ATDNQDFLME IARDFWRREF YEAPELIIAY AMHRTRTPEY 190 200 210 220 230 240 YARLLEYAAK YPGIRIIPQA EKPEFSALDG FKAARKKVAD AWPANLDQVL AVFESGDLKA 250 260 270 280 290 300 NQYGKPDSGK AQVFAQAMDD YLQAGEPGFP LFPQFKYFCA DTVQKAGKKG CEIPKLDFFN 310 320 330 340 350 360 DCQELQEAGE EMERELEQYL LYLDQEVFRF AEKAEPERKT AKNIRFFNDL VLGFQKALSG 370 380 390 400 410 420 PMGPALADAV RKKYQAALID EFQDTDAAQY DIFYNLFAGR RQALFLIGDP KQAIYGFRGA 430 440 450 460 470 480 DLFSYLQASR NVEESYSLEN NWRSSPQLIR GVNAVFSRNP QAFVLDGIEF KSVRPKPGVN 490 500 510 520 530 540 PALPLEKGQT PPLEIWAVAP KEDKAVTIGE VQNIAVRAVA SEVSRLLGLG EYSPSDIAVL 550 560 570 580 590 600 VRSNMQAQAV RDGLRQAGVH SVLNRTGDLF ETPEAVEIRR VMTAAAANRL QNVKAALSVS 610 620 630 640 650 660 FLGWTAEELD RLAPGEEVVE KVLTLFSDLH EIWQKSGFMR MFTYFMHNKE LPSAVLTLPE 670 680 690 700 710 720 GERRLTNIMH LAEVLHQAEK ERKLGVSGLI KWLDRQMDLS SPRKDEHQLR LESDAQAVQV 730 740 750 760 770 780 VTMHGSKGLE FPVVFCPFMW QESEPRKGTP LTFHDPDQDE RLTLDLRAED SPHREQAKLE 790 800 810 820 830 840 NVAENVRLAY VALTRAKDRC YMLWGAINKA QTSAPAYLLH GGAVNDGRVE IRLNYKTLFE 850 860 870 880 890 900 DLEELAKGAE NAIALTLPPE EIYPAAFAAG GANPALEALE FKARPDLTWS VTSFSALSMD 910 920 930 940 950 960 QPGRNEPGAD EAAAPGPQVE IEDEPEEEAA DIFAFPRGIG PGIMLHDIFE NLDFLDHAPK 970 980 990 1000 1010 1020 KVLDLVQDKL EVYGFEDQWA QPVAGMVQNV LFCPLEKERP DFTLSRIPMT ARSNEMEFYF 1030 1040 1050 1060 1070 1080 PIKKITPKAF EGIFGNGLPK DRPDRLHFSP VKGFVHGFMD MVFCFDGRYY IVDWKSNHLG 1090 1100 1110 1120 1130 1140 NAPEDYGPES LAHAMVHHKY DLQYLLYTLA LDLHLAQRIK DYDYEKHFGG IFYIFLRGVD 1150 1160 KSLGPEYGIF QDRPGLDMIQ RLKGALL

References

[1]

"Complete sequence of Desulfatibacillum alkenivorans AK-01." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Wawrik B., Richardson P. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AK-01.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001322 Genomic DNA. Translation: ACL04538.1.
RefSeq	YP_002432006.1. NC_011768.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B8FB94.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7166785.
GenomeReviews	Gene locus Dalk_2848 in contig CP001322_GR.
KEGG	dal:Dalk_2848.
PATRIC	21652388. VBIDesAlk8144_3044.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG576417.
OMA	WRVGSYS.
Family and domain databases
InterPro	IPR014017. DNA_helicase_UvrD-like_C. IPR000212. DNA_helicase_UvrD/REP. IPR004586. ExoDNase_V_bsu. IPR011604. Exonuc_phg/RecB_C. IPR014016. Helicase_SF1_UvrD-rel. IPR011335. Restrct_endonuc_II-like. [Graphical view]
Gene3D	G3DSA:3.90.320.10. Exonuc_phg/RecB_C. 1 hit.
KO	K03582.
PANTHER	PTHR11070. UvrD_helicase. 1 hit.
Pfam	PF00580. UvrD-helicase. 1 hit. [Graphical view]
SUPFAM	SSF52980. Restrict_endonuc_II-like_core. 1 hit.
TIGRFAMs	TIGR00609. RecB. 1 hit.
PROSITE	PS51198. UVRD_HELICASE_ATP_BIND. 1 hit. PS51217. UVRD_HELICASE_CTER. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8FB94_DESAA

Accession

Primary (citable) accession number: B8FB94

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)