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B8F7S1 (B8F7S1_HAEPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Tryptophan--tRNA ligase HAMAP-Rule MF_00140
EC=6.1.1.2 HAMAP-Rule MF_00140
Alternative name(s):
Tryptophanyl-tRNA synthetase HAMAP-Rule MF_00140
Gene names
Name:trpS HAMAP-Rule MF_00140 EMBL ACL33373.1
Ordered Locus Names:HAPS_1884
OrganismHaemophilus parasuis serovar 5 (strain SH0165) [Complete proteome] [HAMAP]
Taxonomic identifier557723 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pasteurellales › Pasteurellaceae › Haemophilus ›

Protein attributes

Sequence length342 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophyl-tRNA(Trp). SAAS SAAS024109 HAMAP-Rule MF_00140

Subunit structure

Homodimer By similarity. HAMAP-Rule MF_00140

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00140.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00140

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Motif12 – 209"HIGH" region By similarity HAMAP-Rule MF_00140
Motif205 – 2095"KMSKS" region By similarity HAMAP-Rule MF_00140

Sites

Binding site2081ATP By similarity HAMAP-Rule MF_00140

Sequences

Sequence LengthMass (Da)Tools
B8F7S1 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: F9F5CED48F01FABB

FASTA34238,230
        10         20         30         40         50         60 
MSKPIVFSGV QPSGELSLGN YLGALRNWVK MQDEYECLFC IVDSHAITVR QDPEALRKAT 

        70         80         90        100        110        120 
LDTLAIYLAC GIDPAKSTIF IQSHVPEHSQ LAWILNCYTY FGEMGRMTQF KDKSARHEDN 

       130        140        150        160        170        180 
VNVGLFTYPV LMAADILLYQ ANQVPVGDDQ KQHLEITRDI ANRFNALYGK KDAEGNVLEP 

       190        200        210        220        230        240 
IFAVPEVFIA KTGARIMSLL EPTKKMSKSD DNRNNVIGLL EDPKSVAKKI KRAMTDGDEP 

       250        260        270        280        290        300 
PVVRYDVQNK PGVSNLLDIL ASVTGKTIPE LETEFEGKMY GHLKTAVADE VSAMLSQLQE 

       310        320        330        340 
RYHHFRNNEA LLESIYREGA EKARAKAKAT LAEVYKKVGF VV

« Hide

References

[1]"Complete genome sequence of Haemophilus parasuis SH0165."
Yue M., Yang F., Yang J., Bei W., Cai X., Chen L., Dong J., Zhou R., Jin M., Jin Q., Chen H.
J. Bacteriol. 191:1359-1360(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SH0165 EMBL ACL33373.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001321 Genomic DNA. Translation: ACL33373.1.
RefSeqYP_002476321.1. NC_011852.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING557723.HAPS_1884.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL33373; ACL33373; HAPS_1884.
GeneID7278730.
KEGGhap:HAPS_1884.
PATRIC20196110. VBIHaePar127548_1869.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0180.
HOGENOMHOG000059940.
KOK01867.
OMAHDCLYCV.
ProtClustDBPRK00927.

Enzyme and pathway databases

BioCycHPAR557723:GH24-1884-MONOMER.

Family and domain databases

Gene3D3.40.50.620. 1 hit.
HAMAPMF_00140_B. Trp_tRNA_synth_B.
InterProIPR002305. aa-tRNA-synth_Ic.
IPR014729. Rossmann-like_a/b/a_fold.
IPR002306. Trp-tRNA-ligase.
IPR024109. Trp-tRNA-ligase_bac-type.
[Graphical view]
PANTHERPTHR10055. PTHR10055. 1 hit.
PfamPF00579. tRNA-synt_1b. 1 hit.
[Graphical view]
PRINTSPR01039. TRNASYNTHTRP.
TIGRFAMsTIGR00233. trpS. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8F7S1_HAEPS
AccessionPrimary (citable) accession number: B8F7S1
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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