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B8F744 (RECF_HAEPS) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF
Gene names
Name:recF
Ordered Locus Names:HAPS_1595
OrganismHaemophilus parasuis serovar 5 (strain SH0165) [Complete proteome] [HAMAP]
Taxonomic identifier557723 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pasteurellales › Pasteurellaceae › Haemophilus ›

Protein attributes

Sequence length361 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. HAMAP-Rule MF_00365

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the RecF family.

Ontologies

Keywords
   Biological processDNA damage
DNA repair
DNA replication
SOS response
   Cellular componentCytoplasm
   LigandATP-binding
DNA-binding
Nucleotide-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: HAMAP

DNA replication

Inferred from electronic annotation. Source: HAMAP

SOS response

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: HAMAP

single-stranded DNA binding

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 361361DNA replication and repair protein RecF HAMAP-Rule MF_00365
PRO_1000133690

Regions

Nucleotide binding30 – 378ATP Potential

Sequences

Sequence LengthMass (Da)Tools
B8F744 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: FBD9B67556E493CF

FASTA36141,648
        10         20         30         40         50         60 
MSLSRLIINN FRNLTAVDLE LNHGFNFFIG ANGSGKTSLL EAIFYLGHGK SFKSHISNRI 

        70         80         90        100        110        120 
IKYNQEEFTL FGKIQEEKHE CSVGLQKNRQ GETILRINGE SNKKIADLAY LLPMQVITPE 

       130        140        150        160        170        180 
GLTLLNGGPI YRRAFLDWGL FHQNTDFYHN WNSLKRLLKQ RNAALVQTRH YNELKPWDVE 

       190        200        210        220        230        240 
LSKFAQIVSQ SRAVYVESIL TYIEKNCQFF LPELEITATF YQGWEKERDY ADLLAQGFER 

       250        260        270        280        290        300 
DRSVGYTMVG PQKADFRFRA NGLPVEDVLS RGQLKLLMCA LRLAQGEYFI AQKNRQCIFL 

       310        320        330        340        350        360 
IDDFASELDT QKCELLADRL YQSGSQVFVT AITQEQLKPI QGKRQDNATS FFIKDGKMQF 


M

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References

[1]"Complete genome sequence of Haemophilus parasuis SH0165."
Yue M., Yang F., Yang J., Bei W., Cai X., Chen L., Dong J., Zhou R., Jin M., Jin Q., Chen H.
J. Bacteriol. 191:1359-1360(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SH0165.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001321 Genomic DNA. Translation: ACL33146.1.
RefSeqYP_002476094.1. NC_011852.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING557723.HAPS_1595.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL33146; ACL33146; HAPS_1595.
GeneID7278406.
KEGGhap:HAPS_1595.
PATRIC20195485. VBIHaePar127548_1565.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269560.
KOK03629.
OMADMEIGQV.
ProtClustDBPRK00064.

Enzyme and pathway databases

BioCycHPAR557723:GH24-1595-MONOMER.

Family and domain databases

HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR003395. RecF/RecN/SMC.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECF_HAEPS
AccessionPrimary (citable) accession number: B8F744
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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