Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Haemophilus parasuis serovar 5 (strain SH0165)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciHPAR557723:GH24-1559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:HAPS_1559
OrganismiHaemophilus parasuis serovar 5 (strain SH0165)
Taxonomic identifieri557723 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus
ProteomesiUP000006743 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 689689Glycine--tRNA ligase beta subunitPRO_1000197202Add
BLAST

Proteomic databases

PRIDEiB8F711.

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi557723.HAPS_1559.

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264303.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8F711-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTQNFLAEI GTEELPPKAL KKLATAFAEN VEAELNQAGL SFDKVEWFAA
60 70 80 90 100
PRRLAVKVLG LATAQPSKEV EKRGPAVSAA FDAEGKPTKA AEGWAKGCGI
110 120 130 140 150
TVEQAERIAT DKGEWLVHRA VIEGQPTKNL LVGIISQALA KLPIPKTMRW
160 170 180 190 200
GDKTEQFVRP VHTVTLLLGD ELIEGEILGV ASGTTVRGHR FLGEREFQIS
210 220 230 240 250
HADQYPALLK EKGSVVADFN ERKALILAKA QEKATALGGV ADIEEDLLDE
260 270 280 290 300
VTSLVEYPNV LAAKFEERFL AVPAEALVYT MKGDQKYFPI YDKDGKLLPH
310 320 330 340 350
FIFVSNINPE DPSKIIEGNE KVVRPRLTDA EFFFKTDLKQ RLEDQLPRLE
360 370 380 390 400
TVLFQQQLGT LRDKTARIEQ LAGEIAKQIG ADETKAKRAG LLSKCDLMTN
410 420 430 440 450
MVFEFTDTQG VMGMHYARHD GEDEEVAVAL NEQYMPRFAG DELPKSLVAS
460 470 480 490 500
SVALADKFDT LTGIFGIGQA PKGSADPFAL RRAALGALRI IVEKNLPLDL
510 520 530 540 550
SDLVATSAKL FGDKLTNSNV VEEVVDFMLG RFRAWYQDEG IAVDVIQAVL
560 570 580 590 600
ARRPTRPADF DARVRAVSHF RTLDSAEALA AANKRVSNIL AKVEGKISSE
610 620 630 640 650
IDRTLLVEAE EKALAEQVIT LQAELVPLFE KGEYQTALDR LAGLREVVDN
660 670 680
FFDKVMVNAE DPKLRQNRQA ILNNLRNLFL QVADISLLQ
Length:689
Mass (Da):76,027
Last modified:March 3, 2009 - v1
Checksum:i8ABB781988A62A17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001321 Genomic DNA. Translation: ACL33113.1.
RefSeqiWP_015939829.1. NC_011852.1.
YP_002476061.1. NC_011852.1.

Genome annotation databases

EnsemblBacteriaiACL33113; ACL33113; HAPS_1559.
GeneIDi7277007.
KEGGihap:HAPS_1559.
PATRICi20195415. VBIHaePar127548_1531.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001321 Genomic DNA. Translation: ACL33113.1.
RefSeqiWP_015939829.1. NC_011852.1.
YP_002476061.1. NC_011852.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi557723.HAPS_1559.

Proteomic databases

PRIDEiB8F711.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL33113; ACL33113; HAPS_1559.
GeneIDi7277007.
KEGGihap:HAPS_1559.
PATRICi20195415. VBIHaePar127548_1531.

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264303.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Enzyme and pathway databases

BioCyciHPAR557723:GH24-1559-MONOMER.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Haemophilus parasuis SH0165."
    Yue M., Yang F., Yang J., Bei W., Cai X., Chen L., Dong J., Zhou R., Jin M., Jin Q., Chen H.
    J. Bacteriol. 191:1359-1360(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SH0165.

Entry informationi

Entry nameiSYGB_HAEPS
AccessioniPrimary (citable) accession number: B8F711
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: April 29, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.