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B8F711 (SYGB_HAEPS) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycine--tRNA ligase beta subunit

EC=6.1.1.14
Alternative name(s):
Glycyl-tRNA synthetase beta subunit
Short name=GlyRS
Gene names
Name:glyS
Ordered Locus Names:HAPS_1559
OrganismHaemophilus parasuis serovar 5 (strain SH0165) [Complete proteome] [HAMAP]
Taxonomic identifier557723 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeHaemophilus

Protein attributes

Sequence length689 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). HAMAP-Rule MF_00255

Subunit structure

Tetramer of two alpha and two beta subunits By similarity.

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00255.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

glycyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: InterPro

glycine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 689689Glycine--tRNA ligase beta subunit HAMAP-Rule MF_00255
PRO_1000197202

Sequences

Sequence LengthMass (Da)Tools
B8F711 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 8ABB781988A62A17

FASTA68976,027
        10         20         30         40         50         60 
MTTQNFLAEI GTEELPPKAL KKLATAFAEN VEAELNQAGL SFDKVEWFAA PRRLAVKVLG 

        70         80         90        100        110        120 
LATAQPSKEV EKRGPAVSAA FDAEGKPTKA AEGWAKGCGI TVEQAERIAT DKGEWLVHRA 

       130        140        150        160        170        180 
VIEGQPTKNL LVGIISQALA KLPIPKTMRW GDKTEQFVRP VHTVTLLLGD ELIEGEILGV 

       190        200        210        220        230        240 
ASGTTVRGHR FLGEREFQIS HADQYPALLK EKGSVVADFN ERKALILAKA QEKATALGGV 

       250        260        270        280        290        300 
ADIEEDLLDE VTSLVEYPNV LAAKFEERFL AVPAEALVYT MKGDQKYFPI YDKDGKLLPH 

       310        320        330        340        350        360 
FIFVSNINPE DPSKIIEGNE KVVRPRLTDA EFFFKTDLKQ RLEDQLPRLE TVLFQQQLGT 

       370        380        390        400        410        420 
LRDKTARIEQ LAGEIAKQIG ADETKAKRAG LLSKCDLMTN MVFEFTDTQG VMGMHYARHD 

       430        440        450        460        470        480 
GEDEEVAVAL NEQYMPRFAG DELPKSLVAS SVALADKFDT LTGIFGIGQA PKGSADPFAL 

       490        500        510        520        530        540 
RRAALGALRI IVEKNLPLDL SDLVATSAKL FGDKLTNSNV VEEVVDFMLG RFRAWYQDEG 

       550        560        570        580        590        600 
IAVDVIQAVL ARRPTRPADF DARVRAVSHF RTLDSAEALA AANKRVSNIL AKVEGKISSE 

       610        620        630        640        650        660 
IDRTLLVEAE EKALAEQVIT LQAELVPLFE KGEYQTALDR LAGLREVVDN FFDKVMVNAE 

       670        680 
DPKLRQNRQA ILNNLRNLFL QVADISLLQ 

« Hide

References

[1]"Complete genome sequence of Haemophilus parasuis SH0165."
Yue M., Yang F., Yang J., Bei W., Cai X., Chen L., Dong J., Zhou R., Jin M., Jin Q., Chen H.
J. Bacteriol. 191:1359-1360(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SH0165.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001321 Genomic DNA. Translation: ACL33113.1.
RefSeqYP_002476061.1. NC_011852.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING557723.HAPS_1559.

Proteomic databases

PRIDEB8F711.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL33113; ACL33113; HAPS_1559.
GeneID7277007.
KEGGhap:HAPS_1559.
PATRIC20195415. VBIHaePar127548_1531.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0751.
HOGENOMHOG000264303.
KOK01879.
OMAMVMAEDE.
OrthoDBEOG661H9S.
ProtClustDBPRK01233.

Enzyme and pathway databases

BioCycHPAR557723:GH24-1559-MONOMER.

Family and domain databases

HAMAPMF_00255. Gly_tRNA_synth_beta.
InterProIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSPR01045. TRNASYNTHGB.
SMARTSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR00211. glyS. 1 hit.
PROSITEPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYGB_HAEPS
AccessionPrimary (citable) accession number: B8F711
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: February 19, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries