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B8EQX8 (B8EQX8_METSB) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA topoisomerase IV, B subunit EMBL ACK49399.1
EC=5.99.1.3 EMBL ACK49399.1
Gene names
Ordered Locus Names:Msil_0425
OrganismMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) [Complete proteome] [HAMAP] EMBL ACK49399.1
Taxonomic identifier395965 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Beijerinckiaceae › Methylocella

Protein attributes

Sequence length698 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionIsomerase EMBL ACK49399.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processDNA topological change

Inferred from electronic annotation. Source: InterPro

   Cellular componentchromosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

DNA topoisomerase (ATP-hydrolyzing) activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8EQX8 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 3C5E419CC1DDEDC1

FASTA69875,374
        10         20         30         40         50         60 
MANHGDLFGA AARKPAAARP EAGKSARSSA AKGADIKSAA QEPARLGTPG EAGYTAASIE 

        70         80         90        100        110        120 
VLEGLEPVRR RPGMYIGGTD EAALHHLFAE VLDNAMDEAV AGHASFIDVS YDAAGFLSVT 

       130        140        150        160        170        180 
DNGRGIPVDP HPKFPKKSAL EVIMTTLHAG GKFDSGAYQT SGGLHGVGVS VVNALSESLE 

       190        200        210        220        230        240 
VEVARGQTLY RQSFARGKPL GRLEEVGKAP NRRGTRVRFT PDPQIFGKGA QFKPARLVKM 

       250        260        270        280        290        300 
ARAKAYLFGG VEIRWRCAPE RIEPGSSTPR EAVFHFPGGL KDFLAVDIEG KERVIEPIFA 

       310        320        330        340        350        360 
GKIEKPGGHG SLEWALAWLA MDDGFVHSYC NTIPTPDGGA HEAGLRAALL RGLKDHAERI 

       370        380        390        400        410        420 
GQSRRAAAIS ADDVMGSCAA LVSIFIREPE FQGQNKSRLM SAEASRIVDQ TVRDAFDHWL 

       430        440        450        460        470        480 
AAAPSHALKL LDWAVERAED RLRRRAEKDV ARKTASRKLR LPGKLADCSN TAAQGSELFI 

       490        500        510        520        530        540 
VEGDSAGGSA KQGRNRASQA ILPLRGKILN VASATRDKLA ANQQLSDLML ALGCGVGAHY 

       550        560        570        580        590        600 
REDELRYEKI IIMTDADVDG AHIASLLITF FYRQTPKLIE GGHLYLAVPP LYRLTQGARQ 

       610        620        630        640        650        660 
VYARDDAHRD ELIARVLTGR GKIEISRFKG LGEMLPAQLK ETTMDPGKRN LLRVVVLPED 

       670        680        690 
REGTSDSVER LMGNKPEARF AFIQERAAFA NAADLVVV

« Hide

References

[1]"Complete sequence of Methylocella silvestris BL2."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Forester B., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Dunfield P.F., Dedysh S.N., Liesack W. expand/collapse author list , Stott M.B., Smirnova A.V., Alam M., Chen Y., Murrell J.C., Richardson P.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BL2 / DSM 15510 / NCIMB 13906.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001280 Genomic DNA. Translation: ACK49399.1.
RefSeqYP_002360761.1. NC_011666.1.

3D structure databases

ProteinModelPortalB8EQX8.
ModBaseSearch...

Protein-protein interaction databases

STRINGB8EQX8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7093584.
GenomeReviewsGene locus Msil_0425 in contig CP001280_GR.
KEGGmsl:Msil_0425.
PATRIC22596133. VBIMetSil55537_0461.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG304889.
OMAQARDKEF.
ProtClustDBPRK05559.

Family and domain databases

InterProIPR003594. ATPase-like_ATP-bd.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR001241. Topo_IIA.
IPR013759. Topo_IIA_B/N_ab.
IPR002288. Topo_IIA_B_C.
IPR013506. Topo_IIA_bsu_dom2.
IPR013760. Topo_IIA_cen.
IPR018522. TopoIIA_CS.
IPR005737. TopoIV_B_Gneg.
[Graphical view]
Gene3DG3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit.
G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit.
G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KOK02622.
PfamPF00204. DNA_gyraseB. 1 hit.
PF00986. DNA_gyraseB_C. 1 hit.
PF02518. HATPase_c. 1 hit.
[Graphical view]
PRINTSPR00418. TPI2FAMILY.
SMARTSM00387. HATPase_c. 1 hit.
SM00433. TOP2c. 1 hit.
[Graphical view]
SUPFAMSSF55874. ATP_bd_ATPase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMsTIGR01055. ParE_Gneg. 1 hit.
PROSITEPS00177. TOPOISOMERASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8EQX8_METSB
AccessionPrimary (citable) accession number: B8EQX8
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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