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B8EQB6

- B8EQB6_METSB

UniProt

B8EQB6 - B8EQB6_METSB

Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Functioni

    The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi50 – 578ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA repair Source: UniProtKB-HAMAP
    2. DNA replication Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA repair, DNA replicationUniRule annotationSAAS annotation, SOS responseUniRule annotationSAAS annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotationSAAS annotation, DNA-bindingUniRule annotationSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciMSIL395965:GCND-3274-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA replication and repair protein RecFUniRule annotation
    Gene namesi
    Name:recFUniRule annotation
    Ordered Locus Names:Msil_3222Imported
    OrganismiMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)Imported
    Taxonomic identifieri395965 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeMethylocella
    ProteomesiUP000002257: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi395965.Msil_3222.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecF family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1195.
    HOGENOMiHOG000269558.
    KOiK03629.
    OMAiYDEICAL.
    OrthoDBiEOG6HTP3X.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    HAMAPiMF_00365. RecF.
    InterProiIPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    TIGRFAMsiTIGR00611. recf. 1 hit.
    PROSITEiPS00617. RECF_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8EQB6-1 [UniParc]FASTAAdd to Basket

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    MQTEALATES SPAPPAKQAR RGVRRLTLAD FRSYASLDME ILAQTVVLTG    50
    DNGAGKTNVL EALSLLTPGR GLRRAELSDC ARNFGGGGFA VSIEIDAEGG 100
    RLQLGTGVEP NGGAALARKF RIDREPAPSI RAFCDHIRVV WLTPAMDGLF 150
    VGSPGDRRRF LDRLVLSLDA DHGARVNALE RALRSRNRLL EERGAGNERL 200
    WLDAVEREVA ELAIAVAAAR FETVSKLAAL IAQAGPETEG GFPLAELSLD 250
    GDIDRLIETR PALEAEDEYR KILRDNRGRD AAAGRTLIGP QSSDLAVRHA 300
    RKQAAASHSS TGEQKALLVG LILAQARLIK AMSGLAPLVL LDEIAAHFDP 350
    KRRAALYELL GALGAQVWLT GADPSAFAEL EGKAQMLQVT PGAIRELH 398
    Length:398
    Mass (Da):42,643
    Last modified:March 3, 2009 - v1
    Checksum:i66E5526AD4C1B8A0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001280 Genomic DNA. Translation: ACK52129.1.
    RefSeqiWP_012592198.1. NC_011666.1.
    YP_002363491.1. NC_011666.1.

    Genome annotation databases

    EnsemblBacteriaiACK52129; ACK52129; Msil_3222.
    GeneIDi7090637.
    KEGGimsl:Msil_3222.
    PATRICi22602214. VBIMetSil55537_3457.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001280 Genomic DNA. Translation: ACK52129.1 .
    RefSeqi WP_012592198.1. NC_011666.1.
    YP_002363491.1. NC_011666.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395965.Msil_3222.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACK52129 ; ACK52129 ; Msil_3222 .
    GeneIDi 7090637.
    KEGGi msl:Msil_3222.
    PATRICi 22602214. VBIMetSil55537_3457.

    Phylogenomic databases

    eggNOGi COG1195.
    HOGENOMi HOG000269558.
    KOi K03629.
    OMAi YDEICAL.
    OrthoDBi EOG6HTP3X.

    Enzyme and pathway databases

    BioCyci MSIL395965:GCND-3274-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    HAMAPi MF_00365. RecF.
    InterProi IPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    TIGRFAMsi TIGR00611. recf. 1 hit.
    PROSITEi PS00617. RECF_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2."
      Chen Y., Crombie A., Rahman M.T., Dedysh S.N., Liesack W., Stott M.B., Alam M., Theisen A.R., Murrell J.C., Dunfield P.F.
      J. Bacteriol. 192:3840-3841(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BL2 / DSM 15510 / NCIMB 13906Imported.

    Entry informationi

    Entry nameiB8EQB6_METSB
    AccessioniPrimary (citable) accession number: B8EQB6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3