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B8EQB6 (B8EQB6_METSB) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF RuleBase RU000578 HAMAP-Rule MF_00365
Gene names
Name:recF HAMAP-Rule MF_00365
Ordered Locus Names:Msil_3222 EMBL ACK52129.1
OrganismMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) [Complete proteome] [HAMAP] EMBL ACK52129.1
Taxonomic identifier395965 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeMethylocella

Protein attributes

Sequence length398 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. RuleBase RU000578 HAMAP-Rule MF_00365

Subcellular location

Cytoplasm By similarity RuleBase RU000578 HAMAP-Rule MF_00365.

Sequence similarities

Belongs to the RecF family. RuleBase RU000578 HAMAP-Rule MF_00365

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding50 – 578ATP By similarity HAMAP-Rule MF_00365

Sequences

Sequence LengthMass (Da)Tools
B8EQB6 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 66E5526AD4C1B8A0

FASTA39842,643
        10         20         30         40         50         60 
MQTEALATES SPAPPAKQAR RGVRRLTLAD FRSYASLDME ILAQTVVLTG DNGAGKTNVL 

        70         80         90        100        110        120 
EALSLLTPGR GLRRAELSDC ARNFGGGGFA VSIEIDAEGG RLQLGTGVEP NGGAALARKF 

       130        140        150        160        170        180 
RIDREPAPSI RAFCDHIRVV WLTPAMDGLF VGSPGDRRRF LDRLVLSLDA DHGARVNALE 

       190        200        210        220        230        240 
RALRSRNRLL EERGAGNERL WLDAVEREVA ELAIAVAAAR FETVSKLAAL IAQAGPETEG 

       250        260        270        280        290        300 
GFPLAELSLD GDIDRLIETR PALEAEDEYR KILRDNRGRD AAAGRTLIGP QSSDLAVRHA 

       310        320        330        340        350        360 
RKQAAASHSS TGEQKALLVG LILAQARLIK AMSGLAPLVL LDEIAAHFDP KRRAALYELL 

       370        380        390 
GALGAQVWLT GADPSAFAEL EGKAQMLQVT PGAIRELH 

« Hide

References

[1]"Complete sequence of Methylocella silvestris BL2."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Forester B., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Dunfield P.F., Dedysh S.N., Liesack W. expand/collapse author list , Stott M.B., Smirnova A.V., Alam M., Chen Y., Murrell J.C., Richardson P.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BL2 / DSM 15510 / NCIMB 13906.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001280 Genomic DNA. Translation: ACK52129.1.
RefSeqYP_002363491.1. NC_011666.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING395965.Msil_3222.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACK52129; ACK52129; Msil_3222.
GeneID7090637.
KEGGmsl:Msil_3222.
PATRIC22602214. VBIMetSil55537_3457.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269558.
KOK03629.
OMALDDIMSH.
OrthoDBEOG6HTP3X.
ProtClustDBCLSK2478989.

Enzyme and pathway databases

BioCycMSIL395965:GCND-3274-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
SUPFAMSSF52540. SSF52540. 2 hits.
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00617. RECF_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8EQB6_METSB
AccessionPrimary (citable) accession number: B8EQB6
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: April 16, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)