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B8EKE2

- B8EKE2_METSB

UniProt

B8EKE2 - B8EKE2_METSB

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Protein
Submitted name: DNA ligase D
Gene
Msil_1736
Organism
Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSIL395965:GCND-1765-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Msil_1736Imported
OrganismiMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)Imported
Taxonomic identifieri395965 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeMethylocella
ProteomesiUP000002257: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi395965.Msil_1736.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8EKE2-1 [UniParc]FASTAAdd to Basket

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MADTKLKTYR AKRDFAQTAE PSGEAPIAAG PRRRFVIQKH AATRLHYDLR    50
LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GVIPKGQYGG 100
GTVQLWDRGF WAPEGDKTPE QALADGDLKF TLDGQRLYGS WVLVRMKADR 150
TGGKRTNWLL IKHRDGYARD GDADALLAED RSVASGRAMA AIAAGKGKGP 200
KPFMLAGEQA ADPKAVWDSN KGLAAEARAA PKATRKKSGA ALAQMPDFLP 250
PQLCQPVERP PSGDGWVHEI KFDGYRMQLR VAGGKATLKT RKGLDWTDKF 300
AAIAAEAADF PDAIIDGEIV ALDSSGSPDF VALQAALSEQ NTDDLIFYAF 350
DLMFEGGRDL RLEPLAARKQ ALARLIAGAR LGAGALIRFV EHFETGGDAI 400
LQSACRLNLE GIVSKKRDAP YQPGRSDSWT RAKCRAGHEV VIGGWTTTEG 450
KFRSLLAGVH HGENFTYIGR IGTGFGEAKV KTLLPKLKQF AAETSPFTGP 500
SAPRKTASIH WLKPELVAEI EFAGFTGAGM VRQAAFKGLR EDKPAEEVEA 550
ETPAPPEQAA VPDPAEIQAS ARSSSDKPMA TANGKPIVMG VAISNPAKEL 600
WPADGAEAPV SKLDLARYYE AAGPWLIEHV RGRPCSLIRA PDGITGQQFF 650
QRHAMAGASN LLDLVTVSGD RAPYLQIDRV EGLAAVAQIA GLELHPWNCA 700
PGRPETPGRL IFDLDPGPDV AFEQVAAAAL EMRDRLDALG LVSFCKTTGG 750
KGLHVVTPLA VAKGSKLTWP EAKGFAQEVC RRMAADNSNA YLLNMSKKLR 800
AGRIFLDYLR NDRMSTAVAP LSPRARPGAT VSMPLNWSEA TNSLDPKAFT 850
IRTSVGLLDK SKAWADYDSG ARPLEAAIKR LGRAKAAA 888
Length:888
Mass (Da):95,708
Last modified:March 3, 2009 - v1
Checksum:i41303A7E819AC29E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001280 Genomic DNA. Translation: ACK50682.1.
RefSeqiYP_002362044.1. NC_011666.1.

Genome annotation databases

EnsemblBacteriaiACK50682; ACK50682; Msil_1736.
GeneIDi7090848.
KEGGimsl:Msil_1736.
PATRICi22599011. VBIMetSil55537_1879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001280 Genomic DNA. Translation: ACK50682.1 .
RefSeqi YP_002362044.1. NC_011666.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 395965.Msil_1736.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACK50682 ; ACK50682 ; Msil_1736 .
GeneIDi 7090848.
KEGGi msl:Msil_1736.
PATRICi 22599011. VBIMetSil55537_1879.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MSIL395965:GCND-1765-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2."
    Chen Y., Crombie A., Rahman M.T., Dedysh S.N., Liesack W., Stott M.B., Alam M., Theisen A.R., Murrell J.C., Dunfield P.F.
    J. Bacteriol. 192:3840-3841(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BL2 / DSM 15510 / NCIMB 13906.

Entry informationi

Entry nameiB8EKE2_METSB
AccessioniPrimary (citable) accession number: B8EKE2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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