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B8EKE2 (B8EKE2_METSB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ACK50682.1
Gene names
Ordered Locus Names:Msil_1736
OrganismMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) [Complete proteome] [HAMAP] EMBL ACK50682.1
Taxonomic identifier395965 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Beijerinckiaceae › Methylocella ›

Protein attributes

Sequence length888 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACK50682.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8EKE2 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 41303A7E819AC29E

FASTA88895,708
        10         20         30         40         50         60 
MADTKLKTYR AKRDFAQTAE PSGEAPIAAG PRRRFVIQKH AATRLHYDLR LELDGVFKSW 

        70         80         90        100        110        120 
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GVIPKGQYGG GTVQLWDRGF WAPEGDKTPE 

       130        140        150        160        170        180 
QALADGDLKF TLDGQRLYGS WVLVRMKADR TGGKRTNWLL IKHRDGYARD GDADALLAED 

       190        200        210        220        230        240 
RSVASGRAMA AIAAGKGKGP KPFMLAGEQA ADPKAVWDSN KGLAAEARAA PKATRKKSGA 

       250        260        270        280        290        300 
ALAQMPDFLP PQLCQPVERP PSGDGWVHEI KFDGYRMQLR VAGGKATLKT RKGLDWTDKF 

       310        320        330        340        350        360 
AAIAAEAADF PDAIIDGEIV ALDSSGSPDF VALQAALSEQ NTDDLIFYAF DLMFEGGRDL 

       370        380        390        400        410        420 
RLEPLAARKQ ALARLIAGAR LGAGALIRFV EHFETGGDAI LQSACRLNLE GIVSKKRDAP 

       430        440        450        460        470        480 
YQPGRSDSWT RAKCRAGHEV VIGGWTTTEG KFRSLLAGVH HGENFTYIGR IGTGFGEAKV 

       490        500        510        520        530        540 
KTLLPKLKQF AAETSPFTGP SAPRKTASIH WLKPELVAEI EFAGFTGAGM VRQAAFKGLR 

       550        560        570        580        590        600 
EDKPAEEVEA ETPAPPEQAA VPDPAEIQAS ARSSSDKPMA TANGKPIVMG VAISNPAKEL 

       610        620        630        640        650        660 
WPADGAEAPV SKLDLARYYE AAGPWLIEHV RGRPCSLIRA PDGITGQQFF QRHAMAGASN 

       670        680        690        700        710        720 
LLDLVTVSGD RAPYLQIDRV EGLAAVAQIA GLELHPWNCA PGRPETPGRL IFDLDPGPDV 

       730        740        750        760        770        780 
AFEQVAAAAL EMRDRLDALG LVSFCKTTGG KGLHVVTPLA VAKGSKLTWP EAKGFAQEVC 

       790        800        810        820        830        840 
RRMAADNSNA YLLNMSKKLR AGRIFLDYLR NDRMSTAVAP LSPRARPGAT VSMPLNWSEA 

       850        860        870        880 
TNSLDPKAFT IRTSVGLLDK SKAWADYDSG ARPLEAAIKR LGRAKAAA

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References

[1]"Complete sequence of Methylocella silvestris BL2."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Forester B., Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Dunfield P.F., Dedysh S.N., Liesack W. expand/collapse author list , Stott M.B., Smirnova A.V., Alam M., Chen Y., Murrell J.C., Richardson P.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BL2 / DSM 15510 / NCIMB 13906.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001280 Genomic DNA. Translation: ACK50682.1.
RefSeqYP_002362044.1. NC_011666.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING395965.Msil_1736.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACK50682; ACK50682; Msil_1736.
GeneID7090848.
KEGGmsl:Msil_1736.
PATRIC22599011. VBIMetSil55537_1879.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8EKE2_METSB
AccessionPrimary (citable) accession number: B8EKE2
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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