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B8EKE2

- B8EKE2_METSB

UniProt

B8EKE2 - B8EKE2_METSB

Protein
Submitted name:

DNA ligase D

Gene

Msil_1736

Organism
Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMSIL395965:GCND-1765-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Msil_1736Imported
    OrganismiMethylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906)Imported
    Taxonomic identifieri395965 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBeijerinckiaceaeMethylocella
    ProteomesiUP000002257: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi395965.Msil_1736.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8EKE2-1 [UniParc]FASTAAdd to Basket

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    MADTKLKTYR AKRDFAQTAE PSGEAPIAAG PRRRFVIQKH AATRLHYDLR    50
    LELDGVFKSW AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GVIPKGQYGG 100
    GTVQLWDRGF WAPEGDKTPE QALADGDLKF TLDGQRLYGS WVLVRMKADR 150
    TGGKRTNWLL IKHRDGYARD GDADALLAED RSVASGRAMA AIAAGKGKGP 200
    KPFMLAGEQA ADPKAVWDSN KGLAAEARAA PKATRKKSGA ALAQMPDFLP 250
    PQLCQPVERP PSGDGWVHEI KFDGYRMQLR VAGGKATLKT RKGLDWTDKF 300
    AAIAAEAADF PDAIIDGEIV ALDSSGSPDF VALQAALSEQ NTDDLIFYAF 350
    DLMFEGGRDL RLEPLAARKQ ALARLIAGAR LGAGALIRFV EHFETGGDAI 400
    LQSACRLNLE GIVSKKRDAP YQPGRSDSWT RAKCRAGHEV VIGGWTTTEG 450
    KFRSLLAGVH HGENFTYIGR IGTGFGEAKV KTLLPKLKQF AAETSPFTGP 500
    SAPRKTASIH WLKPELVAEI EFAGFTGAGM VRQAAFKGLR EDKPAEEVEA 550
    ETPAPPEQAA VPDPAEIQAS ARSSSDKPMA TANGKPIVMG VAISNPAKEL 600
    WPADGAEAPV SKLDLARYYE AAGPWLIEHV RGRPCSLIRA PDGITGQQFF 650
    QRHAMAGASN LLDLVTVSGD RAPYLQIDRV EGLAAVAQIA GLELHPWNCA 700
    PGRPETPGRL IFDLDPGPDV AFEQVAAAAL EMRDRLDALG LVSFCKTTGG 750
    KGLHVVTPLA VAKGSKLTWP EAKGFAQEVC RRMAADNSNA YLLNMSKKLR 800
    AGRIFLDYLR NDRMSTAVAP LSPRARPGAT VSMPLNWSEA TNSLDPKAFT 850
    IRTSVGLLDK SKAWADYDSG ARPLEAAIKR LGRAKAAA 888
    Length:888
    Mass (Da):95,708
    Last modified:March 3, 2009 - v1
    Checksum:i41303A7E819AC29E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001280 Genomic DNA. Translation: ACK50682.1.
    RefSeqiYP_002362044.1. NC_011666.1.

    Genome annotation databases

    EnsemblBacteriaiACK50682; ACK50682; Msil_1736.
    GeneIDi7090848.
    KEGGimsl:Msil_1736.
    PATRICi22599011. VBIMetSil55537_1879.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001280 Genomic DNA. Translation: ACK50682.1 .
    RefSeqi YP_002362044.1. NC_011666.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 395965.Msil_1736.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACK50682 ; ACK50682 ; Msil_1736 .
    GeneIDi 7090848.
    KEGGi msl:Msil_1736.
    PATRICi 22599011. VBIMetSil55537_1879.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MSIL395965:GCND-1765-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2."
      Chen Y., Crombie A., Rahman M.T., Dedysh S.N., Liesack W., Stott M.B., Alam M., Theisen A.R., Murrell J.C., Dunfield P.F.
      J. Bacteriol. 192:3840-3841(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BL2 / DSM 15510 / NCIMB 13906Imported.

    Entry informationi

    Entry nameiB8EKE2_METSB
    AccessioniPrimary (citable) accession number: B8EKE2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3