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B8EEN5 (ARAA_SHEB2) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase
EC=5.3.1.4
Gene names
Name:araA
Ordered Locus Names:Sbal223_2140
OrganismShewanella baltica (strain OS223) [Complete proteome] [HAMAP]
Taxonomic identifier407976 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length500 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP MF_00519

Catalytic activity

L-arabinose = L-ribulose. HAMAP MF_00519

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP MF_00519

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519

Sequence similarities

Belongs to the arabinose isomerase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 500500L-arabinose isomerase HAMAP MF_00519
PRO_1000189550

Sites

Metal binding3061Manganese By similarity
Metal binding3331Manganese By similarity
Metal binding3491Manganese By similarity
Metal binding4481Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
B8EEN5 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: D8F71B24884877A4

FASTA50055,649
        10         20         30         40         50         60 
MKAFKQKQVW FVTGSQDLYG PKVLEQVAKN SEQIVHGFNQ SDAISMEVVY KPTVKSPREI 

        70         80         90        100        110        120 
YAVCQAANSD ENCVGVILWM HTFSPAKMWI AGLNELSKPF MHLHTQFNAE LPWADINMNY 

       130        140        150        160        170        180 
MNTHQSAHGC REFGYIGTRM RKERKVVVGH WQTNDVQAQV DDWCRAAAGW NESQNLRIAR 

       190        200        210        220        230        240 
FGDNMRQVAV TEGDKVAAQI QFGYEVHAYS LGELNDAINA VADNDITAQI DRYASEYVIS 

       250        260        270        280        290        300 
NELFNDEYQL DRLRKEAQIE LGLTQFLKDG EFGAFTNCFE NLTGMTGLPG LATQRLMANG 

       310        320        330        340        350        360 
IGYGGEGDWK TAAMVRIMKV MGQGRTGGTS FMEDYTYNFG VTDQVLGAHM LEVCPSIAAA 

       370        380        390        400        410        420 
KPRLEVHRHT IGVRCDVPRL LFTGKAGPAI NVSTIDLGNR FRIILNELDT VTPPQELPNL 

       430        440        450        460        470        480 
PVASALWEPR PNLSIAAAAW IHAGGAHHSA YSQAISTDNI VDFAEMAGAE LVIIDADTRI 

       490        500 
RQFKNELRQN SVYYGLARGL

« Hide

References

[1]"Complete sequence of chromosome of Shewanella baltica OS223."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Ovchinnikova G., Brettar I., Rodrigues J., Konstantinidis K., Tiedje J.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS223.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001252 Genomic DNA. Translation: ACK46643.1.
RefSeqYP_002358066.1. NC_011663.1.

3D structure databases

ProteinModelPortalB8EEN5.
SMRB8EEN5. Positions 1-496.
ModBaseSearch...

Protein-protein interaction databases

STRINGB8EEN5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7085946.
GenomeReviewsGene locus Sbal223_2140 in contig CP001252_GR.
KEGGsbp:Sbal223_2140.
PATRIC23480517. VBISheBal125792_2215.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG297198.
OMAEVCPTIA.
ProtClustDBPRK02929.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
[Tree]
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
KOK01804.
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
ProDomPD018364. Lara_isomerase. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAA_SHEB2
AccessionPrimary (citable) accession number: B8EEN5
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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