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B8E7H5 (B8E7H5_SHEB2) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:Sbal223_2439 EMBL ACK46934.1
OrganismShewanella baltica (strain OS223) [Complete proteome] [HAMAP] EMBL ACK46934.1
Taxonomic identifier407976 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length309 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ACK46934.1
   Molecular functionLigase EMBL ACK46934.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 4343 Potential EMBL ACK46934.1
Chain44 – 309266 Potential EMBL ACK46934.1
PRO_5000423782

Sequences

Sequence LengthMass (Da)Tools
B8E7H5 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 3F096597DD41C033

FASTA30934,877
        10         20         30         40         50         60 
MTHTSPLQDL TFHRFIRFRF FKQRLLLLSL LIFGCLAPVT YAQNSPPSIQ LATEFDAQQE 

        70         80         90        100        110        120 
IHIQDFLVSE KLDGVRGYWN GQALLTRQGN LIAAPTWFIA NFPNYPLDGE LWLGRGQFEA 

       130        140        150        160        170        180 
MSSIVRQTSA KDDDWRKVRF MVFDVPKAGG DFQHRYQFAL TELSDKSHYL EVIAQFQVDS 

       190        200        210        220        230        240 
LEALYQKLDS LVAKGAEGLM LHRSSATYVS GRNPNLMKLK PYYDAEATVI GHIPGKGQFA 

       250        260        270        280        290        300 
GQMGAIRVQT PDGRVFNIGT GFNLAERQHP PAVGAIITYK YLGLTVNGLP RFASFLRVRV 


DIDKIDSQQ 

« Hide

References

[1]"Complete sequence of chromosome of Shewanella baltica OS223."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Ovchinnikova G., Brettar I., Rodrigues J., Konstantinidis K., Tiedje J.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS223.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001252 Genomic DNA. Translation: ACK46934.1.
RefSeqYP_002358357.1. NC_011663.1.

3D structure databases

ProteinModelPortalB8E7H5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING407976.Sbal223_2439.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACK46934; ACK46934; Sbal223_2439.
GeneID7089402.
KEGGsbp:Sbal223_2439.
PATRIC23481161. VBISheBal125792_2521.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycSBAL407976:GJ6Y-2529-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8E7H5_SHEB2
AccessionPrimary (citable) accession number: B8E7H5
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: June 11, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)