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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Sbal223_2439

Organism
Shewanella baltica (strain OS223)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSBAL407976:GJ6Y-2529-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Sbal223_2439Imported
OrganismiShewanella baltica (strain OS223)Imported
Taxonomic identifieri407976 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002507 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4343 PotentialImportedAdd
BLAST
Chaini44 – 309266 PotentialImportedPRO_5000423782Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliB8E7H5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B8E7H5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTHTSPLQDL TFHRFIRFRF FKQRLLLLSL LIFGCLAPVT YAQNSPPSIQ
60 70 80 90 100
LATEFDAQQE IHIQDFLVSE KLDGVRGYWN GQALLTRQGN LIAAPTWFIA
110 120 130 140 150
NFPNYPLDGE LWLGRGQFEA MSSIVRQTSA KDDDWRKVRF MVFDVPKAGG
160 170 180 190 200
DFQHRYQFAL TELSDKSHYL EVIAQFQVDS LEALYQKLDS LVAKGAEGLM
210 220 230 240 250
LHRSSATYVS GRNPNLMKLK PYYDAEATVI GHIPGKGQFA GQMGAIRVQT
260 270 280 290 300
PDGRVFNIGT GFNLAERQHP PAVGAIITYK YLGLTVNGLP RFASFLRVRV

DIDKIDSQQ
Length:309
Mass (Da):34,877
Last modified:March 3, 2009 - v1
Checksum:i3F096597DD41C033
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001252 Genomic DNA. Translation: ACK46934.1.
RefSeqiWP_012587829.1. NC_011663.1.
YP_002358357.1. NC_011663.1.

Genome annotation databases

EnsemblBacteriaiACK46934; ACK46934; Sbal223_2439.
KEGGisbp:Sbal223_2439.
PATRICi23481161. VBISheBal125792_2521.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001252 Genomic DNA. Translation: ACK46934.1.
RefSeqiWP_012587829.1. NC_011663.1.
YP_002358357.1. NC_011663.1.

3D structure databases

ProteinModelPortaliB8E7H5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACK46934; ACK46934; Sbal223_2439.
KEGGisbp:Sbal223_2439.
PATRICi23481161. VBISheBal125792_2521.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciSBAL407976:GJ6Y-2529-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: OS223Imported.

Entry informationi

Entry nameiB8E7H5_SHEB2
AccessioniPrimary (citable) accession number: B8E7H5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: June 24, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.