B8E7H5 (B8E7H5_SHEB2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACK46934.1

Gene names

Ordered Locus Names:

Sbal223_2439 EMBL ACK46934.1

Organism

Shewanella baltica (strain OS223) [Complete proteome] [HAMAP] EMBL ACK46934.1

Taxonomic identifier

407976 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella baltica

Protein attributes

Sequence length	309 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ACK46934.1
Molecular function	Ligase EMBL ACK46934.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 43	43	Potential EMBL ACK46934.1
	Chain	44 – 309	266	Potential		PRO_5000423782

Sequences

	Sequence		Length	Mass (Da)
	B8E7H5 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 3F096597DD41C033	FASTA	309	34,877
	10 20 30 40 50 60 MTHTSPLQDL TFHRFIRFRF FKQRLLLLSL LIFGCLAPVT YAQNSPPSIQ LATEFDAQQE 70 80 90 100 110 120 IHIQDFLVSE KLDGVRGYWN GQALLTRQGN LIAAPTWFIA NFPNYPLDGE LWLGRGQFEA 130 140 150 160 170 180 MSSIVRQTSA KDDDWRKVRF MVFDVPKAGG DFQHRYQFAL TELSDKSHYL EVIAQFQVDS 190 200 210 220 230 240 LEALYQKLDS LVAKGAEGLM LHRSSATYVS GRNPNLMKLK PYYDAEATVI GHIPGKGQFA 250 260 270 280 290 300 GQMGAIRVQT PDGRVFNIGT GFNLAERQHP PAVGAIITYK YLGLTVNGLP RFASFLRVRV DIDKIDSQQ

References

[1]

"Complete sequence of chromosome of Shewanella baltica OS223." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L. , Kyrpides N., Ovchinnikova G., Brettar I., Rodrigues J., Konstantinidis K., Tiedje J. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OS223.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001252 Genomic DNA. Translation: ACK46934.1.
RefSeq	YP_002358357.1. NC_011663.1.
3D structure databases
ProteinModelPortal	B8E7H5.
ModBase	Search...
Protein-protein interaction databases
STRING	407976.Sbal223_2439.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACK46934; ACK46934; Sbal223_2439.
GeneID	7089402.
KEGG	sbp:Sbal223_2439.
PATRIC	23481161. VBISheBal125792_2521.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Enzyme and pathway databases
BioCyc	SBAL407976:GJ6Y-2529-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8E7H5_SHEB2

Accession

Primary (citable) accession number: B8E7H5

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)