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B8E3W0 (RLMF_SHEB2) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Sbal223_0131
OrganismShewanella baltica (strain OS223) [Complete proteome] [HAMAP]
Taxonomic identifier407976 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length365 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 365365Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_1000188536

Sequences

Sequence LengthMass (Da)Tools
B8E3W0 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: F4D2F0C8A21EB5DB

FASTA36540,174
        10         20         30         40         50         60 
MSKPAVKSVQ SATAKTATRA VNIRQKVKAP KQAKPEGKGS TKPVKDRPRV EIKKALHPRN 

        70         80         90        100        110        120 
AHLNGYDFPA LISAFPRLKT FVRPTPYGAL SIDFADPLAV KTLNAALLKH HYGIGAWDIP 

       130        140        150        160        170        180 
QGALCPPIPG RVDYVHYVAD LLAEGDKSCA ISKARVLDIG TGANGIYPIL GSQVYGWQFV 

       190        200        210        220        230        240 
ASDISAHSLT NVQSIIEQNP ALQGRISLRL QPDDKAVFKG IVQPEERFEL TLCNPPFHAS 

       250        260        270        280        290        300 
MAEASEGTKR KVNNLQLNRG SSVKAAPKLN FGGQAAELWC QGGERQFLAT MIRESQMFAD 

       310        320        330        340        350        360 
QCLWFTSLVS KQENLKPCYQ ALAQLKVDTV KTIEMQQGNK ITRVLAWSFQ SAAKRKLWRA 


EHLAR

« Hide

References

[1]"Complete sequence of chromosome of Shewanella baltica OS223."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Meincke L., Brettin T., Detter J.C., Han C., Kuske C.R., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Ovchinnikova G., Brettar I., Rodrigues J., Konstantinidis K., Tiedje J.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS223.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001252 Genomic DNA. Translation: ACK44672.1.
RefSeqYP_002356095.1. NC_011663.1.

3D structure databases

ProteinModelPortalB8E3W0.
ModBaseSearch...

Protein-protein interaction databases

STRINGB8E3W0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7086733.
GenomeReviewsGene locus Sbal223_0131 in contig CP001252_GR.
KEGGsbp:Sbal223_0131.
PATRIC23476214. VBISheBal125792_0141.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG747880.
OMAWSFVGSD.
ProtClustDBPRK11727.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_SHEB2
AccessionPrimary (citable) accession number: B8E3W0
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 3, 2009
Last modified: January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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