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B8DWD3

- B8DWD3_BIFA0

UniProt

B8DWD3 - B8DWD3_BIFA0

Protein

Xylose isomerase

Gene

xylA

Organism
Bifidobacterium animalis subsp. lactis (strain AD011)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei103 – 1031UniRule annotation
    Active sitei106 – 1061UniRule annotation
    Metal bindingi234 – 2341Magnesium 1UniRule annotation
    Metal bindingi270 – 2701Magnesium 1UniRule annotation
    Metal bindingi270 – 2701Magnesium 2UniRule annotation
    Metal bindingi273 – 2731Magnesium 2UniRule annotation
    Metal bindingi298 – 2981Magnesium 1UniRule annotation
    Metal bindingi309 – 3091Magnesium 2UniRule annotation
    Metal bindingi311 – 3111Magnesium 2UniRule annotation
    Metal bindingi342 – 3421Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBANI442563:GHG0-483-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotationImported
    Ordered Locus Names:BLA_0485Imported
    OrganismiBifidobacterium animalis subsp. lactis (strain AD011)Imported
    Taxonomic identifieri442563 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeBifidobacterialesBifidobacteriaceaeBifidobacterium
    ProteomesiUP000002456: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotationSAAS annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi442563.BLA_0485.

    Structurei

    3D structure databases

    ProteinModelPortaliB8DWD3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000252293.
    KOiK01805.
    OMAiKADSAFE.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8DWD3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGLWDIDKI EYVGRTKGLQ EGLGFQYYDA DKVVAGKKMK DWLRFGVAWW    50
    HTFDAPLTDP FGDGTAQRPW DGKYSDPMDN ALAKVDYAFE FFTKLGAEYF 100
    CFHDRDIAPE GDTLRETNAN LDRVVDKIEE NMQSTGVKLL WNTSSLFTNP 150
    RFVAGASTSP FADVYAYAAA QLKHSLEIGK RLGAENYVFW GGREGYENLW 200
    VTDMKREQEH MAKFFHMCAD YAKQIGMDAQ FLIEPKAKEP TTHQYDFDAA 250
    TACNFLRAYD LIDVFKLNLE GNHANLAGHT YQHEIRVARD NGVLGSLDAN 300
    QGDMLLGWDL DEFPTNLYET TSVMWEVLDE GQIGPHGGLN FDAKPRRTSF 350
    SAEDLFRAHI AGMDSFAAGL LVADKMHQDK YIEDLVANRY GSYDSGIGKS 400
    IDDGTATLES LNDYAIDMPQ SEIIASTHPD HLEDVKATIN NYIIDALANA 450
    Length:450
    Mass (Da):50,562
    Last modified:March 3, 2009 - v1
    Checksum:i12AA2B7016389BA8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001213 Genomic DNA. Translation: ACL28784.1.
    RefSeqiYP_002469360.1. NC_011835.1.

    Genome annotation databases

    EnsemblBacteriaiACL28784; ACL28784; BLA_0485.
    GeneIDi7263895.
    KEGGibla:BLA_0485.
    PATRICi21103847. VBIBifAni98964_0515.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001213 Genomic DNA. Translation: ACL28784.1 .
    RefSeqi YP_002469360.1. NC_011835.1.

    3D structure databases

    ProteinModelPortali B8DWD3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 442563.BLA_0485.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACL28784 ; ACL28784 ; BLA_0485 .
    GeneIDi 7263895.
    KEGGi bla:BLA_0485.
    PATRICi 21103847. VBIBifAni98964_0515.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000252293.
    KOi K01805.
    OMAi KADSAFE.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci BANI442563:GHG0-483-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011."
      Kim J.F., Jeong H., Yu D.S., Choi S.-H., Hur C.-G., Park M.-S., Yoon S.H., Kim D.-W., Ji G.E., Park H.-S., Oh T.K.
      J. Bacteriol. 191:678-679(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AD011Imported.

    Entry informationi

    Entry nameiB8DWD3_BIFA0
    AccessioniPrimary (citable) accession number: B8DWD3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3