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Protein

Putative sporulation transcription regulator WhiA

Gene

whiA

Organism
Bifidobacterium animalis subsp. lactis (strain AD011)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be required for sporulation.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi282 – 31534H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBANI442563:GHG0-1359-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative sporulation transcription regulator WhiAUniRule annotation
Gene namesi
Name:whiAUniRule annotation
Ordered Locus Names:BLA_1367
OrganismiBifidobacterium animalis subsp. lactis (strain AD011)
Taxonomic identifieri442563 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaBifidobacterialesBifidobacteriaceaeBifidobacterium
Proteomesi
  • UP000002456 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 320320Putative sporulation transcription regulator WhiAPRO_0000376447Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the WhiA transcriptional regulatory family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000040188.
KOiK09762.
OMAiIVCPNHE.

Family and domain databases

HAMAPiMF_01420. HTH_type_WhiA. 1 hit.
InterProiIPR027434. Homing_endonucl.
IPR003802. Sporulation_regulator_WhiA.
IPR023054. Sporulation_regulator_WhiA_C.
[Graphical view]
PfamiPF02650. HTH_WhiA. 1 hit.
[Graphical view]
SUPFAMiSSF55608. SSF55608. 1 hit.

Sequencei

Sequence statusi: Complete.

B8DUH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALLDEVKSE LSNIDGGSPA VQKAQVTSML YFGRGFRKVQ RESSTQIIVQ
60 70 80 90 100
PQFDSMEAAH WLQETIESLY KIPAALKSVD VKTPQGSMRR YAVDVGARAG
110 120 130 140 150
FALAVRTGMI DPRLNRIVRG LPTDLSNGNI AQIKGVWRGA FMSAGVLSDP
160 170 180 190 200
DKPSALEIIC PNEETADSLI AMGQRLGIRA AKHTVRSSVR VHLSDPDAIE
210 220 230 240 250
RLLTMMGASS TVRDWTGKRP DTESHHRANR LANFDDANMR RSAKAAAEAV
260 270 280 290 300
VKVQHAFDVL GDDIPQNLRA AGQLRIDHPD FSLEELGRAA RPQISKDAVA
310 320
GRIRRLLQRA EKAEQDAAMA
Length:320
Mass (Da):35,026
Last modified:March 3, 2009 - v1
Checksum:i9493028DDC309FC5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001213 Genomic DNA. Translation: ACL29652.1.
RefSeqiWP_004217922.1. NC_011835.1.

Genome annotation databases

EnsemblBacteriaiACL29652; ACL29652; BLA_1367.
GeneIDi7264771.
KEGGibla:BLA_1367.
PATRICi21105744. VBIBifAni98964_1431.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001213 Genomic DNA. Translation: ACL29652.1.
RefSeqiWP_004217922.1. NC_011835.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL29652; ACL29652; BLA_1367.
GeneIDi7264771.
KEGGibla:BLA_1367.
PATRICi21105744. VBIBifAni98964_1431.

Phylogenomic databases

HOGENOMiHOG000040188.
KOiK09762.
OMAiIVCPNHE.

Enzyme and pathway databases

BioCyciBANI442563:GHG0-1359-MONOMER.

Family and domain databases

HAMAPiMF_01420. HTH_type_WhiA. 1 hit.
InterProiIPR027434. Homing_endonucl.
IPR003802. Sporulation_regulator_WhiA.
IPR023054. Sporulation_regulator_WhiA_C.
[Graphical view]
PfamiPF02650. HTH_WhiA. 1 hit.
[Graphical view]
SUPFAMiSSF55608. SSF55608. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiWHIA_BIFA0
AccessioniPrimary (citable) accession number: B8DUH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: March 3, 2009
Last modified: September 7, 2016
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.