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Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: InterPro
  2. ATP binding Source: UniProtKB-HAMAP
  3. glycine-tRNA ligase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-306-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Short name:
GlyRSUniRule annotation
Gene namesi
Name:glySUniRule annotation
Ordered Locus Names:DvMF_0291
OrganismiDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Taxonomic identifieri883 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000001361: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 701701Glycine--tRNA ligase beta subunitPRO_1000197181Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi883.DvMF_0291.

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264303.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8DPG1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSQFVLEIGF EELPSRFLPG LERELAERFA RALDDDGVEH ESIRVLTTPR
60 70 80 90 100
RAAVLIEGIN PVQREAEEVV PGPPVRVAFD AEGKPTKAAE GFARTQGVDM
110 120 130 140 150
ADIFTLSTDK GEYIAVRKRT GGANAADLIA TACPTVVAAL PFPKRMRWGS
160 170 180 190 200
GDFTFGRPLR WLLALFDDAV VPFEVGGVVS GGVTWGHRIH GAGPLVVKSA
210 220 230 240 250
DDYLNVVIEK GGVTPDPAER RAMILAGGNA AAEAAGGRIL WKESLLDEVQ
260 270 280 290 300
GLAEHPVPLL GDIDPSFLEL PREVLLTSME SHQKSFGVEG PDGALLPHFL
310 320 330 340 350
TVLNLTPLDV ALVKKGWERV LRARLEDGRF FWKTDLAASF DAWLAELDNV
360 370 380 390 400
IFLGPLGSMG DKTRRLEKLC AWLAKAAGVA DESACARAGR LSKADLVSEM
410 420 430 440 450
VGEFDTLQGI MGGIYARRMG EPETVAAALA EQYLPAGPDS PVPATLAGAL
460 470 480 490 500
LSIADKADTM AGCFGLGMIP TGAADPYALR RCALGIARIV LEHGLRIDVR
510 520 530 540 550
ELFRTALALY GERAWKLAPA EALVKLEEFF MARLKNHFMA AGHETLLVEA
560 570 580 590 600
ALAADTPEGA GIDVRAAGAR LAALSDFSRR DDFGSAVLTF KRAANIIRKQ
610 620 630 640 650
GQEGGAVLDG AYSHALLAED AEKALAARLE EVAPRFDALW AADDFASLFG
660 670 680 690 700
LLGELRPAVD AFFDGVMVMC DDAAVRTNRL NLLKALTLRL GRLADFGALQ

M
Length:701
Mass (Da):75,179
Last modified:March 3, 2009 - v1
Checksum:iDAB1C3580E328DA4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL07248.1.
RefSeqiYP_002434716.1. NC_011769.1.

Genome annotation databases

EnsemblBacteriaiACL07248; ACL07248; DvMF_0291.
GeneIDi7172173.
KEGGidvm:DvMF_0291.
PATRICi21770497. VBIDesVul86729_0303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL07248.1.
RefSeqiYP_002434716.1. NC_011769.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi883.DvMF_0291.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL07248; ACL07248; DvMF_0291.
GeneIDi7172173.
KEGGidvm:DvMF_0291.
PATRICi21770497. VBIDesVul86729_0303.

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264303.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-306-MONOMER.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Miyazaki F / DSM 19637.

Entry informationi

Entry nameiSYGB_DESVM
AccessioniPrimary (citable) accession number: B8DPG1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: March 3, 2009
Last modified: February 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.