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B8DPG1

- SYGB_DESVM

UniProt

B8DPG1 - SYGB_DESVM

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Protein
Glycine--tRNA ligase beta subunit
Gene
glyS, DvMF_0291
Organism
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. arginine-tRNA ligase activity Source: InterPro
  3. glycine-tRNA ligase activity Source: UniProtKB-EC

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-306-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunit (EC:6.1.1.14)
Alternative name(s):
Glycyl-tRNA synthetase beta subunit
Short name:
GlyRS
Gene namesi
Name:glyS
Ordered Locus Names:DvMF_0291
OrganismiDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Taxonomic identifieri883 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000001361: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 701701Glycine--tRNA ligase beta subunitUniRule annotation
PRO_1000197181Add
BLAST

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits By similarity.

Protein-protein interaction databases

STRINGi883.DvMF_0291.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264303.
KOiK01879.
OMAiFFAIDEK.
OrthoDBiEOG661H9S.

Family and domain databases

HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8DPG1-1 [UniParc]FASTAAdd to Basket

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MSQFVLEIGF EELPSRFLPG LERELAERFA RALDDDGVEH ESIRVLTTPR    50
RAAVLIEGIN PVQREAEEVV PGPPVRVAFD AEGKPTKAAE GFARTQGVDM 100
ADIFTLSTDK GEYIAVRKRT GGANAADLIA TACPTVVAAL PFPKRMRWGS 150
GDFTFGRPLR WLLALFDDAV VPFEVGGVVS GGVTWGHRIH GAGPLVVKSA 200
DDYLNVVIEK GGVTPDPAER RAMILAGGNA AAEAAGGRIL WKESLLDEVQ 250
GLAEHPVPLL GDIDPSFLEL PREVLLTSME SHQKSFGVEG PDGALLPHFL 300
TVLNLTPLDV ALVKKGWERV LRARLEDGRF FWKTDLAASF DAWLAELDNV 350
IFLGPLGSMG DKTRRLEKLC AWLAKAAGVA DESACARAGR LSKADLVSEM 400
VGEFDTLQGI MGGIYARRMG EPETVAAALA EQYLPAGPDS PVPATLAGAL 450
LSIADKADTM AGCFGLGMIP TGAADPYALR RCALGIARIV LEHGLRIDVR 500
ELFRTALALY GERAWKLAPA EALVKLEEFF MARLKNHFMA AGHETLLVEA 550
ALAADTPEGA GIDVRAAGAR LAALSDFSRR DDFGSAVLTF KRAANIIRKQ 600
GQEGGAVLDG AYSHALLAED AEKALAARLE EVAPRFDALW AADDFASLFG 650
LLGELRPAVD AFFDGVMVMC DDAAVRTNRL NLLKALTLRL GRLADFGALQ 700
M 701
Length:701
Mass (Da):75,179
Last modified:March 3, 2009 - v1
Checksum:iDAB1C3580E328DA4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001197 Genomic DNA. Translation: ACL07248.1.
RefSeqiYP_002434716.1. NC_011769.1.

Genome annotation databases

EnsemblBacteriaiACL07248; ACL07248; DvMF_0291.
GeneIDi7172173.
KEGGidvm:DvMF_0291.
PATRICi21770497. VBIDesVul86729_0303.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001197 Genomic DNA. Translation: ACL07248.1 .
RefSeqi YP_002434716.1. NC_011769.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 883.DvMF_0291.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACL07248 ; ACL07248 ; DvMF_0291 .
GeneIDi 7172173.
KEGGi dvm:DvMF_0291.
PATRICi 21770497. VBIDesVul86729_0303.

Phylogenomic databases

eggNOGi COG0751.
HOGENOMi HOG000264303.
KOi K01879.
OMAi FFAIDEK.
OrthoDBi EOG661H9S.

Enzyme and pathway databases

BioCyci DVUL883:GCJ5-306-MONOMER.

Family and domain databases

HAMAPi MF_00255. Gly_tRNA_synth_beta.
InterProi IPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view ]
Pfami PF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view ]
PRINTSi PR01045. TRNASYNTHGB.
TIGRFAMsi TIGR00211. glyS. 1 hit.
PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Miyazaki F / DSM 19637.

Entry informationi

Entry nameiSYGB_DESVM
AccessioniPrimary (citable) accession number: B8DPG1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: March 3, 2009
Last modified: May 14, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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