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B8DPG1

- SYGB_DESVM

UniProt

B8DPG1 - SYGB_DESVM

Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotation

    GO - Molecular functioni

    1. arginine-tRNA ligase activity Source: InterPro
    2. ATP binding Source: UniProtKB-KW
    3. glycine-tRNA ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginyl-tRNA aminoacylation Source: InterPro
    2. glycyl-tRNA aminoacylation Source: InterPro

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciDVUL883:GCJ5-306-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligase beta subunitUniRule annotation (EC:6.1.1.14UniRule annotation)
    Alternative name(s):
    Glycyl-tRNA synthetase beta subunitUniRule annotation
    Short name:
    GlyRSUniRule annotation
    Gene namesi
    Name:glySUniRule annotation
    Ordered Locus Names:DvMF_0291
    OrganismiDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
    Taxonomic identifieri883 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
    ProteomesiUP000001361: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 701701Glycine--tRNA ligase beta subunitPRO_1000197181Add
    BLAST

    Interactioni

    Subunit structurei

    Tetramer of two alpha and two beta subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi883.DvMF_0291.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0751.
    HOGENOMiHOG000264303.
    KOiK01879.
    OMAiFFAIDEK.
    OrthoDBiEOG661H9S.

    Family and domain databases

    HAMAPiMF_00255. Gly_tRNA_synth_beta.
    InterProiIPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view]
    PfamiPF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view]
    PRINTSiPR01045. TRNASYNTHGB.
    TIGRFAMsiTIGR00211. glyS. 1 hit.
    PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8DPG1-1 [UniParc]FASTAAdd to Basket

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    MSQFVLEIGF EELPSRFLPG LERELAERFA RALDDDGVEH ESIRVLTTPR    50
    RAAVLIEGIN PVQREAEEVV PGPPVRVAFD AEGKPTKAAE GFARTQGVDM 100
    ADIFTLSTDK GEYIAVRKRT GGANAADLIA TACPTVVAAL PFPKRMRWGS 150
    GDFTFGRPLR WLLALFDDAV VPFEVGGVVS GGVTWGHRIH GAGPLVVKSA 200
    DDYLNVVIEK GGVTPDPAER RAMILAGGNA AAEAAGGRIL WKESLLDEVQ 250
    GLAEHPVPLL GDIDPSFLEL PREVLLTSME SHQKSFGVEG PDGALLPHFL 300
    TVLNLTPLDV ALVKKGWERV LRARLEDGRF FWKTDLAASF DAWLAELDNV 350
    IFLGPLGSMG DKTRRLEKLC AWLAKAAGVA DESACARAGR LSKADLVSEM 400
    VGEFDTLQGI MGGIYARRMG EPETVAAALA EQYLPAGPDS PVPATLAGAL 450
    LSIADKADTM AGCFGLGMIP TGAADPYALR RCALGIARIV LEHGLRIDVR 500
    ELFRTALALY GERAWKLAPA EALVKLEEFF MARLKNHFMA AGHETLLVEA 550
    ALAADTPEGA GIDVRAAGAR LAALSDFSRR DDFGSAVLTF KRAANIIRKQ 600
    GQEGGAVLDG AYSHALLAED AEKALAARLE EVAPRFDALW AADDFASLFG 650
    LLGELRPAVD AFFDGVMVMC DDAAVRTNRL NLLKALTLRL GRLADFGALQ 700
    M 701
    Length:701
    Mass (Da):75,179
    Last modified:March 3, 2009 - v1
    Checksum:iDAB1C3580E328DA4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001197 Genomic DNA. Translation: ACL07248.1.
    RefSeqiYP_002434716.1. NC_011769.1.

    Genome annotation databases

    EnsemblBacteriaiACL07248; ACL07248; DvMF_0291.
    GeneIDi7172173.
    KEGGidvm:DvMF_0291.
    PATRICi21770497. VBIDesVul86729_0303.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001197 Genomic DNA. Translation: ACL07248.1 .
    RefSeqi YP_002434716.1. NC_011769.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 883.DvMF_0291.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACL07248 ; ACL07248 ; DvMF_0291 .
    GeneIDi 7172173.
    KEGGi dvm:DvMF_0291.
    PATRICi 21770497. VBIDesVul86729_0303.

    Phylogenomic databases

    eggNOGi COG0751.
    HOGENOMi HOG000264303.
    KOi K01879.
    OMAi FFAIDEK.
    OrthoDBi EOG661H9S.

    Enzyme and pathway databases

    BioCyci DVUL883:GCJ5-306-MONOMER.

    Family and domain databases

    HAMAPi MF_00255. Gly_tRNA_synth_beta.
    InterProi IPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view ]
    Pfami PF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view ]
    PRINTSi PR01045. TRNASYNTHGB.
    TIGRFAMsi TIGR00211. glyS. 1 hit.
    PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
      Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Miyazaki F / DSM 19637.

    Entry informationi

    Entry nameiSYGB_DESVM
    AccessioniPrimary (citable) accession number: B8DPG1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3