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B8DPG1 (SYGB_DESVM) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glycine--tRNA ligase beta subunit

EC=6.1.1.14
Alternative name(s):
Glycyl-tRNA synthetase beta subunit
Short name=GlyRS
Gene names
Name:glyS
Ordered Locus Names:DvMF_0291
OrganismDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [Complete proteome] [HAMAP]
Taxonomic identifier883 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio

Protein attributes

Sequence length701 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). HAMAP-Rule MF_00255

Subunit structure

Tetramer of two alpha and two beta subunits By similarity.

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00255.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

glycyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: InterPro

glycine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 701701Glycine--tRNA ligase beta subunit HAMAP-Rule MF_00255
PRO_1000197181

Sequences

Sequence LengthMass (Da)Tools
B8DPG1 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: DAB1C3580E328DA4

FASTA70175,179
        10         20         30         40         50         60 
MSQFVLEIGF EELPSRFLPG LERELAERFA RALDDDGVEH ESIRVLTTPR RAAVLIEGIN 

        70         80         90        100        110        120 
PVQREAEEVV PGPPVRVAFD AEGKPTKAAE GFARTQGVDM ADIFTLSTDK GEYIAVRKRT 

       130        140        150        160        170        180 
GGANAADLIA TACPTVVAAL PFPKRMRWGS GDFTFGRPLR WLLALFDDAV VPFEVGGVVS 

       190        200        210        220        230        240 
GGVTWGHRIH GAGPLVVKSA DDYLNVVIEK GGVTPDPAER RAMILAGGNA AAEAAGGRIL 

       250        260        270        280        290        300 
WKESLLDEVQ GLAEHPVPLL GDIDPSFLEL PREVLLTSME SHQKSFGVEG PDGALLPHFL 

       310        320        330        340        350        360 
TVLNLTPLDV ALVKKGWERV LRARLEDGRF FWKTDLAASF DAWLAELDNV IFLGPLGSMG 

       370        380        390        400        410        420 
DKTRRLEKLC AWLAKAAGVA DESACARAGR LSKADLVSEM VGEFDTLQGI MGGIYARRMG 

       430        440        450        460        470        480 
EPETVAAALA EQYLPAGPDS PVPATLAGAL LSIADKADTM AGCFGLGMIP TGAADPYALR 

       490        500        510        520        530        540 
RCALGIARIV LEHGLRIDVR ELFRTALALY GERAWKLAPA EALVKLEEFF MARLKNHFMA 

       550        560        570        580        590        600 
AGHETLLVEA ALAADTPEGA GIDVRAAGAR LAALSDFSRR DDFGSAVLTF KRAANIIRKQ 

       610        620        630        640        650        660 
GQEGGAVLDG AYSHALLAED AEKALAARLE EVAPRFDALW AADDFASLFG LLGELRPAVD 

       670        680        690        700 
AFFDGVMVMC DDAAVRTNRL NLLKALTLRL GRLADFGALQ M 

« Hide

References

[1]"Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Miyazaki F / DSM 19637.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001197 Genomic DNA. Translation: ACL07248.1.
RefSeqYP_002434716.1. NC_011769.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING883.DvMF_0291.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL07248; ACL07248; DvMF_0291.
GeneID7172173.
KEGGdvm:DvMF_0291.
PATRIC21770497. VBIDesVul86729_0303.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0751.
HOGENOMHOG000264303.
KOK01879.
OMAFFAIDEK.
OrthoDBEOG661H9S.

Enzyme and pathway databases

BioCycDVUL883:GCJ5-306-MONOMER.

Family and domain databases

HAMAPMF_00255. Gly_tRNA_synth_beta.
InterProIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSPR01045. TRNASYNTHGB.
TIGRFAMsTIGR00211. glyS. 1 hit.
PROSITEPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYGB_DESVM
AccessionPrimary (citable) accession number: B8DPG1
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: March 3, 2009
Last modified: May 14, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries