Skip Header

Contribute Send feedback
Read comments (?) or add your own

B8DNL1 (SELD_DESVM) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Selenide, water dikinase
EC=2.7.9.3
Alternative name(s):
Selenium donor protein
Selenophosphate synthase
Gene names
Name:selD
Ordered Locus Names:DvMF_0107
OrganismDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [Complete proteome] [HAMAP]
Taxonomic identifier883 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio

Protein attributes

Sequence length350 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625

Catalytic activity

ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625

Cofactor

Magnesium By similarity. HAMAP MF_00625

Sequence similarities

Belongs to the selenophosphate synthase 1 family. Class I subfamily.

Ontologies

Keywords
   Coding sequence diversitySelenocysteine
   LigandATP-binding
Magnesium
Nucleotide-binding
Selenium
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

selenide, water dikinase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 350350Selenide, water dikinase HAMAP MF_00625
PRO_1000130518

Regions

Nucleotide binding230 – 2367ATP Potential

Sites

Active site151 Potential
Site181Important for catalytic activity By similarity

Amino acid modifications

Non-standard residue151Selenocysteine HAMAP MF_00625

Sequences

Sequence LengthMass (Da)Tools
B8DNL1 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 2177CB71AD09B66A

FASTA35036,472
        10         20         30         40         50         60 
MSRIRLVDSV KAAGUAAKVA PGDLERILAG LPRDPSVEDR VIVGTRHNED AAVVRLPGGQ 

        70         80         90        100        110        120 
SIVQTLDFFT PIVNDPYHFG RIAAANALSD VYAMGGEPWC AMNIVCFPVK RLPESILADI 

       130        140        150        160        170        180 
LRGGSDALRE AGAALVGGHS VEDDELKYGL SVTGLIDPEI IASNAGLRPG DHLLLTKPLG 

       190        200        210        220        230        240 
TGILATAVKA NWPGCDAHEE ELFRWASRLN KGAGRVIREL RLKAATDVTG FGLGGHCLEM 

       250        260        270        280        290        300 
AGASGVTVAL DTAALPVLPG VTELAGMGLV PEGSHANRAH CHKHVHVAPG VSPVLVDVAF 

       310        320        330        340        350 
DAQTSGGMLL AVSPDQMDAA TTLLAETGDP AYPVGEVLKP LPGGVRLLLR

« Hide

References

[1]"Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Miyazaki F / DSM 19637.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001197 Genomic DNA. Translation: ACL07068.1.
RefSeqYP_002434536.1. NC_011769.1.

3D structure databases

ProteinModelPortalB8DNL1.
ModBaseSearch...

Protein-protein interaction databases

STRINGB8DNL1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7171981.
GenomeReviewsGene locus DvMF_0107 in contig CP001197_GR.
KEGGdvm:DvMF_0107.
PATRIC21770099. VBIDesVul86729_0111.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG383791.
OMALTQMVTL.
ProtClustDBCLSK705167.

Family and domain databases

HAMAPMF_00625. SelD.
[Tree]
InterProIPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR016188. PurM_N-like.
IPR004536. SelD.
IPR023061. SelD_I.
[Graphical view]
KOK01008.
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMSSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.
TIGRFAMsTIGR00476. SelD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSELD_DESVM
AccessionPrimary (citable) accession number: B8DNL1
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: March 3, 2009
Last modified: January 25, 2012
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents