Reviewed, UniProtKB/Swiss-Prot B8DNL1 (SELD_DESVM)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	DvMF_0107

Organism

Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [Complete proteome] [HAMAP]

Taxonomic identifier

883 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio

Protein attributes

Sequence length	350 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity. HAMAP MF_00625
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Coding sequence diversity	Selenocysteine
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 350	350	Selenide, water dikinase HAMAP MF_00625		PRO_1000130518
Regions
	Nucleotide binding	230 – 236	7	ATP Potential
Sites
	Active site	15	1	Potential
	Site	18	1	Important for catalytic activity By similarity
Amino acid modifications
	Non-standard residue	15	1	Selenocysteine HAMAP MF_00625

Sequences

	Sequence		Length	Mass (Da)
	B8DNL1-1 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 2177CB71AD09B66A	FASTA	350	36,472
	10 20 30 40 50 60 MSRIRLVDSV KAAGUAAKVA PGDLERILAG LPRDPSVEDR VIVGTRHNED AAVVRLPGGQ 70 80 90 100 110 120 SIVQTLDFFT PIVNDPYHFG RIAAANALSD VYAMGGEPWC AMNIVCFPVK RLPESILADI 130 140 150 160 170 180 LRGGSDALRE AGAALVGGHS VEDDELKYGL SVTGLIDPEI IASNAGLRPG DHLLLTKPLG 190 200 210 220 230 240 TGILATAVKA NWPGCDAHEE ELFRWASRLN KGAGRVIREL RLKAATDVTG FGLGGHCLEM 250 260 270 280 290 300 AGASGVTVAL DTAALPVLPG VTELAGMGLV PEGSHANRAH CHKHVHVAPG VSPVLVDVAF 310 320 330 340 350 DAQTSGGMLL AVSPDQMDAA TTLLAETGDP AYPVGEVLKP LPGGVRLLLR

References

[1]

"Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P. Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001197 Genomic DNA. Translation: ACL07068.1.
RefSeq	YP_002434536.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	7171981.
GenomeReviews	Gene locus DvMF_0107 in contig CP001197_GR.
KEGG	dvm:DvMF_0107.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG383791.
Family and domain databases
HAMAP	MF_00625. SelD. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR016188. PurM_N-like. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_DESVM

Accession

Primary (citable) accession number: B8DNL1

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	March 3, 2009
Last modified:	February 9, 2010
This is version 11 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)