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B8DN21 (B8DN21_DESVM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:DvMF_0003 EMBL ACL06965.1
OrganismDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637) [Complete proteome] [HAMAP] EMBL ACL06965.1
Taxonomic identifier883 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio

Protein attributes

Sequence length557 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACL06965.1
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionligase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8DN21 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 86C1F1A33039193F

FASTA55761,243
        10         20         30         40         50         60 
MTYTTKFTAK DYKEFCATFR IDAPDTFNFA FDVLDPIAAA DPGRLCIAHV DDAGVRRDYT 

        70         80         90        100        110        120 
FAWMAEASAK LANALRLRGI RKGDRVMLVL YRRIEFWVSM LALHRLGAVA IPAPAQLTPK 

       130        140        150        160        170        180 
DIVFRVERAK TRCVIVDHSI TERVEAARPD CPGLAVCVQV GGDALPRGWV DYDTIFTPAE 

       190        200        210        220        230        240 
ARFPRPESPL EFAGGEDPLL IFFSSGTTGM PKMVEHVHTY PLGHLLTGMY WHDLVPGDLH 

       250        260        270        280        290        300 
LTLADTGWGK AVWGKFYGQW MAGASVFVYD FRGKFEPAAL LDVLAAHAVT TFCAPPTVYR 

       310        320        330        340        350        360 
FLVRQDLSAY DLSKLRHCTT AGELLNDSVF HDWKAATGLE IHEGYGQTET TLQIATLPCM 

       370        380        390        400        410        420 
TPKAGSIGRP MPGWDVVLQD AAGNICPPGE EGEICVRVAE GLPVGLFRGY LEEPEKTASV 

       430        440        450        460        470        480 
MFGGYYHTGD KAWMDEDGYY WFLGRVDDLI KSSGYRIGPF EVESALVAHP AVVEAAVTGV 

       490        500        510        520        530        540 
PDPLRGQAVK ATVVLAAGYT ASDALTKELQ DHVKKVTAPY KYPRIIDYVA ELPKTISGKI 

       550 
KRAEIRERDQ QASGPGA 

« Hide

References

[1]"Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Miyazaki F / DSM 19637.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001197 Genomic DNA. Translation: ACL06965.1.
RefSeqYP_002434433.1. NC_011769.1.

3D structure databases

ProteinModelPortalB8DN21.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING883.DvMF_0003.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL06965; ACL06965; DvMF_0003.
GeneID7171870.
KEGGdvm:DvMF_0003.
PATRIC21769871. VBIDesVul86729_0004.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0365.
HOGENOMHOG000229982.
KOK01895.
OMAQFASEEH.
OrthoDBEOG60GRR8.
ProtClustDBCLSK705664.

Enzyme and pathway databases

BioCycDVUL883:GCJ5-3-MONOMER.

Family and domain databases

InterProIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEPS00455. AMP_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8DN21_DESVM
AccessionPrimary (citable) accession number: B8DN21
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: November 13, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)