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Protein
Submitted name:

AMP-dependent synthetase and ligase

Gene

DvMF_0003

Organism
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-3-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
AMP-dependent synthetase and ligaseImported
Gene namesi
Ordered Locus Names:DvMF_0003Imported
OrganismiDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)Imported
Taxonomic identifieri883 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
ProteomesiUP000001361 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi883.DvMF_0003.

Structurei

3D structure databases

ProteinModelPortaliB8DN21.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0365.
HOGENOMiHOG000229982.
KOiK01895.
OMAiFTFKDMK.
OrthoDBiEOG60GRR8.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8DN21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYTTKFTAK DYKEFCATFR IDAPDTFNFA FDVLDPIAAA DPGRLCIAHV
60 70 80 90 100
DDAGVRRDYT FAWMAEASAK LANALRLRGI RKGDRVMLVL YRRIEFWVSM
110 120 130 140 150
LALHRLGAVA IPAPAQLTPK DIVFRVERAK TRCVIVDHSI TERVEAARPD
160 170 180 190 200
CPGLAVCVQV GGDALPRGWV DYDTIFTPAE ARFPRPESPL EFAGGEDPLL
210 220 230 240 250
IFFSSGTTGM PKMVEHVHTY PLGHLLTGMY WHDLVPGDLH LTLADTGWGK
260 270 280 290 300
AVWGKFYGQW MAGASVFVYD FRGKFEPAAL LDVLAAHAVT TFCAPPTVYR
310 320 330 340 350
FLVRQDLSAY DLSKLRHCTT AGELLNDSVF HDWKAATGLE IHEGYGQTET
360 370 380 390 400
TLQIATLPCM TPKAGSIGRP MPGWDVVLQD AAGNICPPGE EGEICVRVAE
410 420 430 440 450
GLPVGLFRGY LEEPEKTASV MFGGYYHTGD KAWMDEDGYY WFLGRVDDLI
460 470 480 490 500
KSSGYRIGPF EVESALVAHP AVVEAAVTGV PDPLRGQAVK ATVVLAAGYT
510 520 530 540 550
ASDALTKELQ DHVKKVTAPY KYPRIIDYVA ELPKTISGKI KRAEIRERDQ

QASGPGA
Length:557
Mass (Da):61,243
Last modified:March 3, 2009 - v1
Checksum:i86C1F1A33039193F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL06965.1.
RefSeqiWP_012611173.1. NC_011769.1.

Genome annotation databases

EnsemblBacteriaiACL06965; ACL06965; DvMF_0003.
KEGGidvm:DvMF_0003.
PATRICi21769871. VBIDesVul86729_0004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL06965.1.
RefSeqiWP_012611173.1. NC_011769.1.

3D structure databases

ProteinModelPortaliB8DN21.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi883.DvMF_0003.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL06965; ACL06965; DvMF_0003.
KEGGidvm:DvMF_0003.
PATRICi21769871. VBIDesVul86729_0004.

Phylogenomic databases

eggNOGiCOG0365.
HOGENOMiHOG000229982.
KOiK01895.
OMAiFTFKDMK.
OrthoDBiEOG60GRR8.

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-3-MONOMER.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Miyazaki F / DSM 19637Imported.

Entry informationi

Entry nameiB8DN21_DESVM
AccessioniPrimary (citable) accession number: B8DN21
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: July 22, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.