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Protein
Submitted name:

Type III secretion outer membrane pore, YscC/HrcC family

Gene

DvMF_2426

Organism
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-2494-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type III secretion outer membrane pore, YscC/HrcC familyImported
Gene namesi
Ordered Locus Names:DvMF_2426Imported
OrganismiDesulfovibrio vulgaris (strain Miyazaki F / DSM 19637)Imported
Taxonomic identifieri883 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
Proteomesi
  • UP000001361 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 666643Sequence analysisPRO_5002867411Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi883.DvMF_2426.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini189 – 316128Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000228558.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiEOG6423BN.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.

Sequencei

Sequence statusi: Complete.

B8DMS7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRDALPTLAL LLCLLVAVTP CMAAPAASPV SGVSGVSGGS GGFVGAYTHY
60 70 80 90 100
SEQEDLTVLL MDFARSQGLG ASFSPGVTGT VSGRFDAVPP EKFLQGMRAA
110 120 130 140 150
FGVLWYRVGA TLNFYSEAET SRIFISPRVM SAEALYQALK QSSVLSPQLP
160 170 180 190 200
ADLMPGGGMI VVAGPQGYLD QVSAAVSAFE EAQTSNFGMR VFPLKYAWAE
210 220 230 240 250
DISVNSMDKT VTLPGVASIL RAMVTGSPAS ASRVTQEPAT VDKLSGTGLV
260 270 280 290 300
AQGRQQAQPQ QSQAPQGQQG AQQPAQARGQ QVSIMADPRV NAVIVHDAVY
310 320 330 340 350
RMPYYESVIG DLDKPVELVE IHAAIVDIDS DYKRDLGVTY QGTAGSGQRW
360 370 380 390 400
AGGGDFSTGT DAFPTLPSPG KPLGNGLTLS TIYTMGSDYF LAQVTALEKN
410 420 430 440 450
GEARMLGRPS VLTVDNVQAT LENTSTYYIE VQGYQAVDLF KVEAGTVLRV
460 470 480 490 500
TPHIIRNEDG GQSIKLVVSV QDDQNDNSSA TSTSNSTAIP PVKQTKINTQ
510 520 530 540 550
AIVGGGQSLL IGGYYYEQKS TTDTGIPILM DIPVLGHLFK TNSKTSKRME
560 570 580 590 600
RLILITPKVV RLNELPATPE RVDDPSFHRS ATQGDYNEKV PAPAPRRSGG
610 620 630 640 650
CTRSVTTVDP AEPAAPGSSP AAPAKAPAES QLRSQMVPGY PAASETAVPI
660
LPIVPIGPMT DAGGRG
Length:666
Mass (Da):70,145
Last modified:March 3, 2009 - v1
Checksum:iB9D8A5F0D9978D4B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL09367.1.
RefSeqiWP_015946059.1. NC_011769.1.

Genome annotation databases

EnsemblBacteriaiACL09367; ACL09367; DvMF_2426.
KEGGidvm:DvMF_2426.
PATRICi21775255. VBIDesVul86729_2632.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001197 Genomic DNA. Translation: ACL09367.1.
RefSeqiWP_015946059.1. NC_011769.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi883.DvMF_2426.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACL09367; ACL09367; DvMF_2426.
KEGGidvm:DvMF_2426.
PATRICi21775255. VBIDesVul86729_2632.

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000228558.
KOiK03219.
OMAiNAVIVHD.
OrthoDBiEOG6423BN.

Enzyme and pathway databases

BioCyciDVUL883:GCJ5-2494-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 1 hit.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'."
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C., Richardson P.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Miyazaki F / DSM 19637Imported.

Entry informationi

Entry nameiB8DMS7_DESVM
AccessioniPrimary (citable) accession number: B8DMS7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: March 16, 2016
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.