B8D4E6 (B8D4E6_DESK1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine decarboxylase RuleBase RU003740
EC=4.1.1.19 RuleBase RU003740

Gene names

Ordered Locus Names:

DKAM_0651

Organism

Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) [Complete proteome] [HAMAP]

Taxonomic identifier

490899 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Desulfurococcales › Desulfurococcaceae › Desulfurococcus

Protein attributes

Sequence length	592 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. RuleBase RU003740
Cofactor	Magnesium By similarity. RuleBase RU003740
Sequence similarities	Belongs to the Orn/Lys/Arg decarboxylase class-II family. RuleBase RU003737

Ontologies

Keywords
Biological process	Spermidine biosynthesis RuleBase RU003740
Molecular function	Decarboxylase RuleBase RU003740 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro spermidine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8D4E6 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: A0C28A0FF3C967AE	FASTA	592	68,094
	10 20 30 40 50 60 MYEKEMNREE WDINVAKELW GLNHSIRGSI ITVDEEGYLV ISLGEQKIRV KNLLEKHGFD 70 80 90 100 110 120 VAYIRVLPLI ERAIRTVYEA FTELAKVHGF KGSLQPVFPM KVNPIEVVID AIWRYGEKYK 130 140 150 160 170 180 WGFNTGSLGE LELLSKYLEK GGRILIYDGV VSDSVMKILV RFKENGWRVI IDVESEHDLD 190 200 210 220 230 240 ILSKYPEFEI GLRIKPLFRP GGKWAHSAGL EGKFGLTVNT LVKLREEYKW IEERGRLLHI 250 260 270 280 290 300 HPGSQIYKWS DMEAFINEVY NIFTQLQSHG FPSIEIVDLG GGLAYPYLDT RDGTIESPDY 310 320 330 340 350 360 GLIEYFNHIL KIFSRLEKHP TLVYEGGRYI VSAHRILVAK VVDIRPYSTE QAQSLRSAQV 370 380 390 400 410 420 EDFLSNVRSI DDLKKLVNEY KKYIHKSKQV HQYTLEEREL AEDVVSKVRD ELLAKIYELV 430 440 450 460 470 480 RNKPSQIESV INDPLLYKLV TSPSKRYILN FSIFADIPDS VLVNQYFQAV PAQRLNEKPD 490 500 510 520 530 540 VLAVLGDLTC DSMGEINEYI SHVKTPLEAS DWFTKMDLRL MLIPGRRLKL GGVPLHLPIK 550 560 570 580 590 GENYYIAILD TGAYQDPLAM KHNLIYGAPE IILDEKDGEV EVKIIEKNGK YL

References

[1]

"Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis." Ravin N.V., Mardanov A.V., Beletsky A.V., Kublanov I.V., Kolganova T.V., Lebedinsky A.V., Chernyh N.A., Bonch-Osmolovskaya E.A., Skryabin K.G. J. Bacteriol. 191:2371-2379(2009) [PubMed: 19114480] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001140 Genomic DNA. Translation: ACL10977.1.
RefSeq	YP_002428344.1. NC_011766.1.
3D structure databases
ProteinModelPortal	B8D4E6.
ModBase	Search...
Protein-protein interaction databases
STRING	B8D4E6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7171765.
GenomeReviews	Gene locus DKAM_0651 in contig CP001140_GR.
KEGG	dka:DKAM_0651.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG460797.
OMA	LICNGYK.
ProtClustDB	CLSK2399448.
Family and domain databases
InterPro	IPR009006. Ala_racemase/Decarboxylase_C. IPR002985. Arg_decrbxlase. IPR022643. De-COase2_C. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 2 hits.
KO	K01585.
PANTHER	PTHR11482:SF3. Arg_decrbxlase. 1 hit.
Pfam	PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view]
PRINTS	PR01180. ARGDCRBXLASE. PR01179. ODADCRBXLASE.
PROSITE	PS00878. ODR_DC_2_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8D4E6_DESK1

Accession

Primary (citable) accession number: B8D4E6

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	November 16, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)