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B8D1M5 (B8D1M5_HALOH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA polymerase LigD polymerase domain protein EMBL ACL69102.1
Gene names
Ordered Locus Names:Hore_03410
OrganismHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) [Complete proteome] [HAMAP]
Taxonomic identifier373903 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Halanaerobiales › Halanaerobiaceae › Halothermothrix ›

Protein attributes

Sequence length313 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular_functionDNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8D1M5 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 4474369312ABCCE0

FASTA31336,247
        10         20         30         40         50         60 
MKLTIGKHDV QLTNLDKVLW PELGYTKGDL INYYINMYPY LKEYLLNRPL SMKSYPDGIN 

        70         80         90        100        110        120 
GKSFYQKDCP DYAPHWLSTY GIFSGHRKDI INWVTINKLS DLVWVANRAS IELHTWFSTT 

       130        140        150        160        170        180 
TNLDKPDFAV FDLDPGSKSS MKDVVDIALT IKNILDEFNV RSFVKTSGKR GLHVYIPVKT 

       190        200        210        220        230        240 
RYTYKEIRSF LQNVAEMVIK LKPEQATVEW RKNKRQGKVY IDYRQNGKSK TLPAPYSLRP 

       250        260        270        280        290        300 
TSKATVSTPL KWSEITPDLN PDNYNIKNIE TRIKQKGNIW ETLLKIRQEL PGLFLGLLLF 

       310 
LSFSLFGGLN TFL

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References

[1]"Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii."
Mavromatis K., Ivanova N., Anderson I., Lykidis A., Hooper S.D., Sun H., Kunin V., Lapidus A., Hugenholtz P., Patel B., Kyrpides N.C.
PLoS ONE 4:E4192-E4192(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: H 168 / OCM 544 / DSM 9562.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001098 Genomic DNA. Translation: ACL69102.1.
RefSeqYP_002508097.1. NC_011899.1.

3D structure databases

ProteinModelPortalB8D1M5.
ModBaseSearch...

Protein-protein interaction databases

STRING373903.Hore_03410.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACL69102; ACL69102; Hore_03410.
GeneID7314729.
KEGGhor:Hore_03410.
PATRIC22099954. VBIHalOre56292_0362.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000244654.
KOK01971.
OMAAMSERDM.

Enzyme and pathway databases

BioCycHORE373903:GHB1-366-MONOMER.

Family and domain databases

InterProIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8D1M5_HALOH
AccessionPrimary (citable) accession number: B8D1M5
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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