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B8D1M5

- B8D1M5_HALOH

UniProt

B8D1M5 - B8D1M5_HALOH

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Protein
Submitted name:

DNA polymerase LigD polymerase domain protein

Gene

Hore_03410

Organism
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA primase activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciHORE373903:GHB1-366-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD polymerase domain proteinImported
Gene namesi
Ordered Locus Names:Hore_03410Imported
OrganismiHalothermothrix orenii (strain H 168 / OCM 544 / DSM 9562)Imported
Taxonomic identifieri373903 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaHalanaerobialesHalanaerobiaceaeHalothermothrix
ProteomesiUP000000719: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi373903.Hore_03410.

Structurei

3D structure databases

ProteinModelPortaliB8D1M5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000244654.
KOiK01971.
OMAiKPLWPEA.
OrthoDBiEOG6FV833.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

B8D1M5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLTIGKHDV QLTNLDKVLW PELGYTKGDL INYYINMYPY LKEYLLNRPL
60 70 80 90 100
SMKSYPDGIN GKSFYQKDCP DYAPHWLSTY GIFSGHRKDI INWVTINKLS
110 120 130 140 150
DLVWVANRAS IELHTWFSTT TNLDKPDFAV FDLDPGSKSS MKDVVDIALT
160 170 180 190 200
IKNILDEFNV RSFVKTSGKR GLHVYIPVKT RYTYKEIRSF LQNVAEMVIK
210 220 230 240 250
LKPEQATVEW RKNKRQGKVY IDYRQNGKSK TLPAPYSLRP TSKATVSTPL
260 270 280 290 300
KWSEITPDLN PDNYNIKNIE TRIKQKGNIW ETLLKIRQEL PGLFLGLLLF
310
LSFSLFGGLN TFL
Length:313
Mass (Da):36,247
Last modified:March 3, 2009 - v1
Checksum:i4474369312ABCCE0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001098 Genomic DNA. Translation: ACL69102.1.
RefSeqiYP_002508097.1. NC_011899.1.

Genome annotation databases

EnsemblBacteriaiACL69102; ACL69102; Hore_03410.
GeneIDi7314729.
KEGGihor:Hore_03410.
PATRICi22099954. VBIHalOre56292_0362.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001098 Genomic DNA. Translation: ACL69102.1 .
RefSeqi YP_002508097.1. NC_011899.1.

3D structure databases

ProteinModelPortali B8D1M5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 373903.Hore_03410.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACL69102 ; ACL69102 ; Hore_03410 .
GeneIDi 7314729.
KEGGi hor:Hore_03410.
PATRICi 22099954. VBIHalOre56292_0362.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000244654.
KOi K01971.
OMAi KPLWPEA.
OrthoDBi EOG6FV833.

Enzyme and pathway databases

BioCyci HORE373903:GHB1-366-MONOMER.

Family and domain databases

InterProi IPR002755. DNA_primase_S.
IPR014145. LigD_pol.
[Graphical view ]
Pfami PF01896. DNA_primase_S. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii."
    Mavromatis K., Ivanova N., Anderson I., Lykidis A., Hooper S.D., Sun H., Kunin V., Lapidus A., Hugenholtz P., Patel B., Kyrpides N.C.
    PLoS ONE 4:E4192-E4192(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: H 168 / OCM 544 / DSM 9562Imported.

Entry informationi

Entry nameiB8D1M5_HALOH
AccessioniPrimary (citable) accession number: B8D1M5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 29, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3