B8CVH7 (B8CVH7_SHEPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
EC=2.1.1.181 HAMAP MF_01848

Alternative name(s):
23S rRNA mA1618 methyltransferase HAMAP MF_01848
rRNA adenine N-6-methyltransferase HAMAP MF_01848

Gene names

Name:	rlmF HAMAP MF_01848
Ordered Locus Names:	swp_5039

Organism

Shewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ31653.1

Taxonomic identifier

225849 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	324 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848 SAAS SAAS010286
Catalytic activity	S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848 SAAS SAAS010286
Subcellular location	Cytoplasm By similarity HAMAP MF_01848 SAAS SAAS010286.
Sequence similarities	Belongs to the methyltransferase superfamily. METT10D/rlmF family. HAMAP MF_01848

Ontologies

Keywords
Biological process	rRNA processing HAMAP MF_01848 SAAS SAAS010286
Cellular component	Cytoplasm HAMAP MF_01848 SAAS SAAS010286
Ligand	S-adenosyl-L-methionine HAMAP MF_01848 SAAS SAAS010286
Molecular function	Methyltransferase HAMAP MF_01848 SAAS SAAS010286 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	rRNA (adenine-N6-)-methyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8CVH7 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 4D09D169D48911F4	FASTA	324	35,917
	10 20 30 40 50 60 MHPRNLHNAG YDFEALISSF NELKPFVSRN DFGNLSIDFA SPKAVKALNA ALLKHHYGVD 70 80 90 100 110 120 NWDIPEGFLC PPIPGRADYI HHIADLLAVK KSSKNKIPKG DKITVLDIGT GANVIYPLLG 130 140 150 160 170 180 VQSYGWQFVG SDVDPASLEN AQQIFAKNPG ISGKFSCRLQ GNTQHVFNGI INKDDRFDVT 190 200 210 220 230 240 LCNPPFHASL AEASAGTARK LTNLAANRAA KSGSKATKKT ANIETAVLNF GGQKAELWCE 250 260 270 280 290 300 GGERQFLSNM ISESRSYASQ CFWFTSLISK KENLKPAQAL LQKVNAHQVK VIEMHQGSKI 310 320 TRILAWTFLT QEQQQLWLQY RELF

References

[1]

"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3." Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X. PLoS ONE 3:E1937-E1937(2008) [PubMed: 18398463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: WP3 EMBL ACJ31653.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000472 Genomic DNA. Translation: ACJ31653.1.
RefSeq	YP_002314240.1. NC_011566.1.
3D structure databases
ProteinModelPortal	B8CVH7.
ModBase	Search...
Protein-protein interaction databases
STRING	B8CVH7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7035938.
GenomeReviews	Gene locus swp_5039 in contig CP000472_GR.
KEGG	swp:swp_5039.
PATRIC	23548265. VBIShePie65056_4628.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG747880.
OMA	WSFVGSD.
ProtClustDB	PRK11727.
Family and domain databases
HAMAP	MF_01848. 23SrRNA_methyltr_F. [Tree]
InterPro	IPR016909. rRNA_lsu_methyltransferase_F. IPR010286. SAM-Mtase_prd. [Graphical view]
KO	K06970.
PANTHER	PTHR13393. DUF890. 1 hit.
Pfam	PF05971. Methyltransf_10. 1 hit. [Graphical view]
PIRSF	PIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8CVH7_SHEPW

Accession

Primary (citable) accession number: B8CVH7

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	January 25, 2012
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)