B8CRI9 (B8CRI9_SHEPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Pyridoxal-dependent decarboxylase EMBL ACJ29997.1
EC=4.1.1.15 EMBL ACJ29997.1

Gene names

Ordered Locus Names:

swp_3293

Organism

Shewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ29997.1

Taxonomic identifier

225849 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella piezotolerans

Protein attributes

Sequence length	548 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL ACJ29997.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8CRI9 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 3D4D1B3D6FC498BD	FASTA	548	60,694
	10 20 30 40 50 60 MTPRRATASE EALLRIFTVP EAPDSTLSVI EQNISQNLMG FLQESVVAVE KPLTEIELDF 70 80 90 100 110 120 QQHQIPAAPQ FVSDYADDMM QTLVAHSVHT SAPSFIGHMT SALPYFVLPL SKMMVGLNQN 130 140 150 160 170 180 LVKIETSKAF TPLERQVLGM MHHLIYAEND DFYQNWMHSA NVSLGAFCSG GTVANITALW 190 200 210 220 230 240 TARNQLLKAD GNYRGVAAQG VMKGLRHYGY DDLAILVSER GHYSLGKTAD LLGIGRENII 250 260 270 280 290 300 QVPTAEDNKV DVSKMRKLAN QLAADKIKVM AIVGVAGTTE TGNIDPLNEL ADLASELNCH 310 320 330 340 350 360 FHVDAAWGGA SLLSEKYRHL LAGIERADSV TIDAHKQMYV PMGAGMVIFK DPTFANAIKH 370 380 390 400 410 420 HAEYILRKGS KDLGSQTLEG SRPGMAMLVH ACLKVIGRDG YEILINNSLE KARYFADLIN 430 440 450 460 470 480 QHQDFELVSK PELCLLTYRY VPQKVQIAMA NARANNDVDK LSEFNSLLDG LTKFVQKRQR 490 500 510 520 530 540 EQGTSFVSRT RINPEKAHLM DIKAVVFRVV LANPLTTPEI LQQVLAEQKV IASQEQRFLP NLLALAER

References

[1]

"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3." Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X. PLoS ONE 3:E1937-E1937(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WP3 / JCM 13877.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000472 Genomic DNA. Translation: ACJ29997.1.
RefSeq	YP_002312584.1. NC_011566.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	225849.swp_3293.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACJ29997; ACJ29997; swp_3293.
GeneID	7034282.
KEGG	swp:swp_3293.
PATRIC	23545040. VBIShePie65056_3033.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000282553.
KO	K01580.
OMA	CHFHVDA.
ProtClustDB	CLSK874231.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8CRI9_SHEPW

Accession

Primary (citable) accession number: B8CRI9

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)