B8CQM4 (B8CQM4_SHEPW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ACJ30490.1
EC=1.1.99.1 EMBL ACJ30490.1

Gene names

Ordered Locus Names:

swp_3811

Organism

Shewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ30490.1

Taxonomic identifier

225849 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	566 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ACJ30490.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8CQM4 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: FD20109931FA232A	FASTA	566	62,185
	10 20 30 40 50 60 MTSISNEKYD YIIVGAGSAG CVLANRLSAD ANNKVLLLET GGSDKSIFIQ MPTALSIPMN 70 80 90 100 110 120 TAKYAWQFET EAEPHLDNRR MHCPRGKVLG GSSSINGMVY VRGHARDFDE WQQEGAKDWD 130 140 150 160 170 180 YAHCLPYFKK AESWAFGGDD YRGVAGPLAV NNGNEMKNPL YKAFVDAGVD AGYLATDDYN 190 200 210 220 230 240 GAQQEGFGAM HMTIKNGVRW STSNAYLRPA MKRSNLTVIT HALVHKVLFS TKAGESKKAV 250 260 270 280 290 300 GVHFERKGKH IEVNANKEVI LSAGSVGSPH ILQLSGIGAA DTLKQAGIEQ VHELPGVGEN 310 320 330 340 350 360 LQDHLEFYFQ FKCLKPISLN GKLDPLNKLF IGTRWILNKS GLGATNHFES CGFIRSKAGL 370 380 390 400 410 420 EWPDLQYHFL PAAMRYDGKE AFAGHGFQVH IGHNKPKSRG SIKVLSSDAH VAPSIQFNYL 430 440 450 460 470 480 SHQDDIEGFR ACVRLTREIS NQNALDEYRG EEIQPGISVQ TDEQIDSFVR SSVESAYHPS 490 500 510 520 530 540 CSCKMGEDAM AVVDSQTRVH GMEGLRVVDS SIFPTIPNGN LNSPTIMVAE RAADLILGHS 550 560 PLSPSTAPVI TANNWQQQQR NHLPKR

References

[1]

"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3." Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X. PLoS ONE 3:E1937-E1937(2008) [PubMed: 18398463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: WP3 EMBL ACJ30490.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000472 Genomic DNA. Translation: ACJ30490.1.
RefSeq	YP_002313077.1. NC_011566.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B8CQM4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7034775.
GenomeReviews	Gene locus swp_3811 in contig CP000472_GR.
KEGG	swp:swp_3811.
PATRIC	23545989. VBIShePie65056_3505.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG734713.
OMA	HMTVKNG.
ProtClustDB	PRK02106.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8CQM4_SHEPW

Accession

Primary (citable) accession number: B8CQM4

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	January 25, 2012
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)