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B8CPT7

- B8CPT7_SHEPW

UniProt

B8CPT7 - B8CPT7_SHEPW

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

swp_3085

Organism
Shewanella piezotolerans (strain WP3 / JCM 13877)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSPIE225849:GH6V-3014-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:swp_3085Imported
OrganismiShewanella piezotolerans (strain WP3 / JCM 13877)Imported
Taxonomic identifieri225849 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000000753: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi225849.swp_3085.

Structurei

3D structure databases

ProteinModelPortaliB8CPT7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

B8CPT7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTKVRKRSSN RKLLRFLNWQ FLLFISFISI SANLKASEIS KPPLQLATEF
60 70 80 90 100
IAESTVQLDD FLVSEKLDGV RGYWDGSSMR SRSGRKINLP DWFTKGFPDY
110 120 130 140 150
PVDGELWIGR NQFEQVSAII RKTHATKAQW QQVRFMVFDL PGETSHFAKR
160 170 180 190 200
YQKALAELSD ISTHIEVIPQ FSVRDKLTLD RRLSDIIENN GEGLMLHRKT
210 220 230 240 250
ALYQVGRTGD IVKLKPFYDA EARVLAHKEG KGKYIGMMGA LLVETKQGKQ
260 270 280 290
FSIGSGFSDE DRRNPPKVGS TITFKYYGET QKGTPRFASF LRVRDPI
Length:297
Mass (Da):33,978
Last modified:March 3, 2009 - v1
Checksum:iDAE204371A216083
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000472 Genomic DNA. Translation: ACJ29800.1.
RefSeqiYP_002312387.1. NC_011566.1.

Genome annotation databases

EnsemblBacteriaiACJ29800; ACJ29800; swp_3085.
GeneIDi7034085.
KEGGiswp:swp_3085.
PATRICi23544626. VBIShePie65056_2829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000472 Genomic DNA. Translation: ACJ29800.1 .
RefSeqi YP_002312387.1. NC_011566.1.

3D structure databases

ProteinModelPortali B8CPT7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 225849.swp_3085.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACJ29800 ; ACJ29800 ; swp_3085 .
GeneIDi 7034085.
KEGGi swp:swp_3085.
PATRICi 23544626. VBIShePie65056_2829.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci SPIE225849:GH6V-3014-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3."
    Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X.
    PLoS ONE 3:E1937-E1937(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WP3 / JCM 13877Imported.

Entry informationi

Entry nameiB8CPT7_SHEPW
AccessioniPrimary (citable) accession number: B8CPT7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 1, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3