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B8CPT7 (B8CPT7_SHEPW) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ACJ29800.1
Gene names
Ordered Locus Names:swp_3085 EMBL ACJ29800.1
OrganismShewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ29800.1
Taxonomic identifier225849 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length297 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACJ29800.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8CPT7 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: DAE204371A216083

FASTA29733,978
        10         20         30         40         50         60 
MTKVRKRSSN RKLLRFLNWQ FLLFISFISI SANLKASEIS KPPLQLATEF IAESTVQLDD 

        70         80         90        100        110        120 
FLVSEKLDGV RGYWDGSSMR SRSGRKINLP DWFTKGFPDY PVDGELWIGR NQFEQVSAII 

       130        140        150        160        170        180 
RKTHATKAQW QQVRFMVFDL PGETSHFAKR YQKALAELSD ISTHIEVIPQ FSVRDKLTLD 

       190        200        210        220        230        240 
RRLSDIIENN GEGLMLHRKT ALYQVGRTGD IVKLKPFYDA EARVLAHKEG KGKYIGMMGA 

       250        260        270        280        290 
LLVETKQGKQ FSIGSGFSDE DRRNPPKVGS TITFKYYGET QKGTPRFASF LRVRDPI 

« Hide

References

[1]"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3."
Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X.
PLoS ONE 3:E1937-E1937(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WP3 / JCM 13877.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000472 Genomic DNA. Translation: ACJ29800.1.
RefSeqYP_002312387.1. NC_011566.1.

3D structure databases

ProteinModelPortalB8CPT7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING225849.swp_3085.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACJ29800; ACJ29800; swp_3085.
GeneID7034085.
KEGGswp:swp_3085.
PATRIC23544626. VBIShePie65056_2829.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Enzyme and pathway databases

BioCycSPIE225849:GH6V-3014-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8CPT7_SHEPW
AccessionPrimary (citable) accession number: B8CPT7
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: April 16, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)