Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase

Gene

swp_3085

Organism
Shewanella piezotolerans (strain WP3 / JCM 13877)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSPIE225849:GH6V-3014-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:swp_3085Imported
OrganismiShewanella piezotolerans (strain WP3 / JCM 13877)Imported
Taxonomic identifieri225849 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000000753: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi225849.swp_3085.

Structurei

3D structure databases

ProteinModelPortaliB8CPT7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

B8CPT7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTKVRKRSSN RKLLRFLNWQ FLLFISFISI SANLKASEIS KPPLQLATEF
60 70 80 90 100
IAESTVQLDD FLVSEKLDGV RGYWDGSSMR SRSGRKINLP DWFTKGFPDY
110 120 130 140 150
PVDGELWIGR NQFEQVSAII RKTHATKAQW QQVRFMVFDL PGETSHFAKR
160 170 180 190 200
YQKALAELSD ISTHIEVIPQ FSVRDKLTLD RRLSDIIENN GEGLMLHRKT
210 220 230 240 250
ALYQVGRTGD IVKLKPFYDA EARVLAHKEG KGKYIGMMGA LLVETKQGKQ
260 270 280 290
FSIGSGFSDE DRRNPPKVGS TITFKYYGET QKGTPRFASF LRVRDPI
Length:297
Mass (Da):33,978
Last modified:March 3, 2009 - v1
Checksum:iDAE204371A216083
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000472 Genomic DNA. Translation: ACJ29800.1.
RefSeqiYP_002312387.1. NC_011566.1.

Genome annotation databases

EnsemblBacteriaiACJ29800; ACJ29800; swp_3085.
GeneIDi7034085.
KEGGiswp:swp_3085.
PATRICi23544626. VBIShePie65056_2829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000472 Genomic DNA. Translation: ACJ29800.1.
RefSeqiYP_002312387.1. NC_011566.1.

3D structure databases

ProteinModelPortaliB8CPT7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi225849.swp_3085.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACJ29800; ACJ29800; swp_3085.
GeneIDi7034085.
KEGGiswp:swp_3085.
PATRICi23544626. VBIShePie65056_2829.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciSPIE225849:GH6V-3014-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3."
    Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X.
    PLoS ONE 3:E1937-E1937(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WP3 / JCM 13877Imported.

Entry informationi

Entry nameiB8CPT7_SHEPW
AccessioniPrimary (citable) accession number: B8CPT7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: January 7, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.