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B8CM78 (B8CM78_SHEPW) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.2.1.12 EMBL ACJ29135.1
Gene names
Ordered Locus Names:swp_2392 EMBL ACJ29135.1
OrganismShewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ29135.1
Taxonomic identifier225849 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length608 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLyase SAAS SAAS000581 EMBL ACJ29135.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processEntner-Doudoroff pathway

Inferred from electronic annotation. Source: InterPro

   Molecular_functionphosphogluconate dehydratase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8CM78 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 96CB43DC52590779

FASTA60864,639
        10         20         30         40         50         60 
MHTVVQSVTD RIIERSKDSR AKYLAALEDA KNRGVHRSAL SCGNLAHGFA ACNPADKSSI 

        70         80         90        100        110        120 
KQLTKANIGI VTSFNDMLSA HQPYGEYPDL LKQACNEVGS VAQVAGGVPA MCDGVTQGQP 

       130        140        150        160        170        180 
GMELSLLSRE VIAMGTAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 

       190        200        210        220        230        240 
MKSGIPNKEK ARIRQKYAQG EVDREALLDA ESKSYHSAGT CTFYGTANSN QLMLEVMGLQ 

       250        260        270        280        290        300 
LPGSSFVNPD DPLREVLSKT AAKQVCRLTE MGTQYTPIGH IVSEKSIVNG IVALLATGGS 

       310        320        330        340        350        360 
TNLTMHIVAA ARAAGVIINW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLIKEL 

       370        380        390        400        410        420 
LDGGLLHEDV ETVAGFGLKR YTQEPQIRDG ELTWVDGQKT SLDSEVLTSL NSPFQANGGL 

       430        440        450        460        470        480 
KLLKGNLGRA VIKVSAVQEQ HRIVEAPAVV IDDQNKLEAI FKAGELDKDC VVVVKGQGPK 

       490        500        510        520        530        540 
AIGMPELHKL TPILGTLQDR GFKVALLTDG RMSGASGKVP AAIHLTPEAL DGGMIAKIHN 

       550        560        570        580        590        600 
GDLVRVNATT GELTLLVDEA ELQARMPEKV DLQKTSYGMG RELFGALRAS LSSPETGARS 


TSAIDEIY 

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References

[1]"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3."
Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X.
PLoS ONE 3:E1937-E1937(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WP3 / JCM 13877.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000472 Genomic DNA. Translation: ACJ29135.1.
RefSeqYP_002311722.1. NC_011566.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING225849.swp_2392.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACJ29135; ACJ29135; swp_2392.
GeneID7033420.
KEGGswp:swp_2392.
PATRIC23543326. VBIShePie65056_2196.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0129.
HOGENOMHOG000173157.
KOK01690.
OMACQHEVEA.
OrthoDBEOG61ZTBF.
ProtClustDBPRK09054.

Enzyme and pathway databases

BioCycSPIE225849:GH6V-2343-MONOMER.

Family and domain databases

InterProIPR004786. 6-phosphgluc_deHydtase.
IPR015928. Aconitase/3IPM_dehydase_swvl.
IPR000581. DiOHA_6PGluconate_deHydtase.
IPR020558. DiOHA_6PGluconate_deHydtase_CS.
[Graphical view]
PANTHERPTHR21000. PTHR21000. 1 hit.
PfamPF00920. ILVD_EDD. 1 hit.
[Graphical view]
SUPFAMSSF52016. SSF52016. 1 hit.
TIGRFAMsTIGR01196. edd. 1 hit.
PROSITEPS00886. ILVD_EDD_1. 1 hit.
PS00887. ILVD_EDD_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8CM78_SHEPW
AccessionPrimary (citable) accession number: B8CM78
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: February 19, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)