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B8CIR3 (B8CIR3_SHEPW) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Transcriptional regulator, LysR family EMBL ACJ27539.1
Gene names
Ordered Locus Names:swp_0723
OrganismShewanella piezotolerans (strain WP3 / JCM 13877) [Complete proteome] [HAMAP] EMBL ACJ27539.1
Taxonomic identifier225849 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length316 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranscription, DNA-dependent

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B8CIR3 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 5D10D43585F528D1

FASTA31634,773
        10         20         30         40         50         60 
MKKLSNISIS TIEIFCQLYL KGSTKVVAND LCLSQPKVSR AISALREVFD DPLFIRKNNQ 

        70         80         90        100        110        120 
LIATELAHHL HISLSEILTC SRSIEEDAIR KVSSAEPPIV IGTVPQLEIG LAQEIVNDAI 

       130        140        150        160        170        180 
NHQLNRNIAI STTAWSELSE QQLIDGEIEA AICFKPSTRK ELLSKSIIQH RGGYLVARSH 

       190        200        210        220        230        240 
HPIWDDPSID NMINYPIVKL ATMPFPANKS PIGVYAASQG KPMQVYATAP DLGSAASSLV 

       250        260        270        280        290        300 
NSEAVMIVGV KAAVDFLASI SGIKAKKVDY SQDRAILKGF SYPTVYLWLK RAPDGKVISP 

       310 
MWLQKTLEAY IIKSHK

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References

[1]"Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3."
Wang F., Wang J., Jian H., Zhang B., Li S., Wang F., Zeng X., Gao L., Bartlett D.H., Yu J., Hu S., Xiao X.
PLoS ONE 3:E1937-E1937(2008) [PubMed: 18398463] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: WP3 EMBL ACJ27539.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000472 Genomic DNA. Translation: ACJ27539.1.
RefSeqYP_002310126.1. NC_011566.1.

3D structure databases

ProteinModelPortalB8CIR3.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7031824.
GenomeReviewsGene locus swp_0723 in contig CP000472_GR.
KEGGswp:swp_0723.
PATRIC23540136. VBIShePie65056_0658.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG680565.
OMAPFPANKS.
ProtClustDBCLSK981646.

Family and domain databases

InterProIPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]
Gene3DG3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
PfamPF00126. HTH_1. 1 hit.
[Graphical view]
PROSITEPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8CIR3_SHEPW
AccessionPrimary (citable) accession number: B8CIR3
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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