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B8CEW3 (B8CEW3_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 28. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:THAPSDRAFT_264717 EMBL EED87972.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length285 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 zinc ion per subunit By similarity. PIRSR PIRSR018001-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1671 By similarity PIRSR PIRSR018001-1
Metal binding91Zinc By similarity
Metal binding121Zinc By similarity
Metal binding1091Zinc By similarity

Experimental info

Non-terminal residue11 EMBL EED87972.1
Non-terminal residue2851 EMBL EED87972.1

Sequences

Sequence LengthMass (Da)Tools
B8CEW3 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 64EA77955CBB0DA2

FASTA28531,677
        10         20         30         40         50         60 
KIAIVGGTHG NEYTGVWCIK SIEKQRELLA YPSLDLHTLL ANPVAYMQNK RFVDVDLNRE 

        70         80         90        100        110        120 
FSVEKLKRAL SSLPHEAVRA REIEAILGPK ITNSNIEEDP LTDVVIDLHT TTTNMGISLI 

       130        140        150        160        170        180 
IPEGDALMSA AAAYYGYENV QCLMHALPQR KDRQNLSSCG RHGFTIEVGP VPQGVIRHDV 

       190        200        210        220        230        240 
VEKTEAAMHS LLEFLHLRNL DMVPCYRSAP AVRPGELSGK ISWSNDATNP NFPAVMIHKS 

       250        260        270        280 
LQDRDFYPLR VGDPLFVGLD GNVITYDGSH GDEVHLIFVN EGGYY 

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED87972.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED87972.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000652 Genomic DNA. Translation: EED87972.1.
RefSeqXP_002294612.1. XM_002294576.1.

3D structure databases

ProteinModelPortalB8CEW3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING35128.JGI264717.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps264717; Thaps264717; Thaps264717.
GeneID7443381.
KEGGtps:THAPSDRAFT_264717.

Phylogenomic databases

eggNOGCOG2988.
HOGENOMHOG000200740.
KOK01437.

Family and domain databases

InterProIPR016708. Aspartoacylase.
IPR007036. Aste_AspA.
[Graphical view]
PfamPF04952. AstE_AspA. 1 hit.
[Graphical view]
PIRSFPIRSF018001. Aspartoacylase. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8CEW3_THAPS
AccessionPrimary (citable) accession number: B8CEW3
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: July 9, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)