Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B8CCT7 (B8CCT7_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=1.3.5.1 EMBL EED89006.1
Gene names
ORF Names:THAPSDRAFT_42475 EMBL EED89006.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length637 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B8CCT7 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 3682775D4F77C653

FASTA63768,963
        10         20         30         40         50         60 
MLSAFARRAS SKATKLASTA PTPTTAVRSL STSTTGDYTI VDHTYDALVI GAGGSGLRAA 

        70         80         90        100        110        120 
MGLSEAGFKT ACVSKLFPTR SHTVAAQGGI NAALGNMGPD DWRWHMYDTV KGSDWLGDQD 

       130        140        150        160        170        180 
AIHYMCREAP KAVLELEEFG LPFSRTEEGK IYQRAFGGQS LDFGKGGQAH RCCAAADRTG 

       190        200        210        220        230        240 
HAMLHTLYGR SLAFDTTYFI EYFAMDLLMT PDGQCVGAMA LNMEDGTLHR IKAKNTVLAT 

       250        260        270        280        290        300 
GGYGRTYFSC TSAHTCTGDG NAMAMRAGLA NQDAEFVQFH PTGIYGAGCL ITEGCRGEGG 

       310        320        330        340        350        360 
ILRNSEGERF MERYAPSAKD LASRDVVSRA MTMEIREGRG VGPKKDHCYL HLDHLPAELL 

       370        380        390        400        410        420 
AERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN HLGEVIRTDF NADGSFNSDV 

       430        440        450        460        470        480 
VVPGLFAAGE AACASVHGAN RLGANSLLDI VVFGRACANR IAEIAKPGDA IADAPADVGM 

       490        500        510        520        530        540 
DSVAELDKLR FATGSTPTSV IRGEMQHLMQ DKAAVYRTEE LLAEGKKEID EVVQSFNDVH 

       550        560        570        580        590        600 
VTDKSLIWNT DLVETLELRN LLGCAATTMH SAENRKESRG AHAHENYPDR LDDEWMKHTL 

       610        620        630 
AYFDEKEGKT KIGYRPIHYY TLDEEECKTV PPVARVY 

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED89006.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED89006.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000649 Genomic DNA. Translation: EED89006.1.
RefSeqXP_002293997.1. XM_002293961.1.

3D structure databases

ProteinModelPortalB8CCT7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING35128.JGI42475.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps42475; Thaps42475; Thaps42475.
GeneID7441832.
KEGGtps:THAPSDRAFT_42475.

Phylogenomic databases

eggNOGCOG1053.
HOGENOMHOG000160475.
KOK00234.
ProtClustDBPLN00128.

Family and domain databases

Gene3D1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8CCT7_THAPS
AccessionPrimary (citable) accession number: B8CCT7
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: November 13, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)