B8CCT7 (B8CCT7_THAPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Succinate dehydrogenase flavoprotein subunit EMBL EED89006.1
EC=1.3.5.1 EMBL EED89006.1

Gene names

ORF Names:

THAPSDRAFT_42475 EMBL EED89006.1

Organism

Thalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]

Taxonomic identifier

35128 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length	637 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Oxidoreductase EMBL EED89006.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	electron transport chain Inferred from electronic annotation. Source: InterPro tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro succinate dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8CCT7 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 3682775D4F77C653	FASTA	637	68,963
	10 20 30 40 50 60 MLSAFARRAS SKATKLASTA PTPTTAVRSL STSTTGDYTI VDHTYDALVI GAGGSGLRAA 70 80 90 100 110 120 MGLSEAGFKT ACVSKLFPTR SHTVAAQGGI NAALGNMGPD DWRWHMYDTV KGSDWLGDQD 130 140 150 160 170 180 AIHYMCREAP KAVLELEEFG LPFSRTEEGK IYQRAFGGQS LDFGKGGQAH RCCAAADRTG 190 200 210 220 230 240 HAMLHTLYGR SLAFDTTYFI EYFAMDLLMT PDGQCVGAMA LNMEDGTLHR IKAKNTVLAT 250 260 270 280 290 300 GGYGRTYFSC TSAHTCTGDG NAMAMRAGLA NQDAEFVQFH PTGIYGAGCL ITEGCRGEGG 310 320 330 340 350 360 ILRNSEGERF MERYAPSAKD LASRDVVSRA MTMEIREGRG VGPKKDHCYL HLDHLPAELL 370 380 390 400 410 420 AERLPGISET AAIFAGVDVT KEPIPVLPTV HYNMGGIPTN HLGEVIRTDF NADGSFNSDV 430 440 450 460 470 480 VVPGLFAAGE AACASVHGAN RLGANSLLDI VVFGRACANR IAEIAKPGDA IADAPADVGM 490 500 510 520 530 540 DSVAELDKLR FATGSTPTSV IRGEMQHLMQ DKAAVYRTEE LLAEGKKEID EVVQSFNDVH 550 560 570 580 590 600 VTDKSLIWNT DLVETLELRN LLGCAATTMH SAENRKESRG AHAHENYPDR LDDEWMKHTL 610 620 630 AYFDEKEGKT KIGYRPIHYY TLDEEECKTV PPVARVY

References

[1]

"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism." Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S. Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED89006.1.

[2]

"The Phaeodactylum genome reveals the evolutionary history of diatom genomes." Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED89006.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000649 Genomic DNA. Translation: EED89006.1.
RefSeq	XP_002293997.1. XM_002293961.1.
3D structure databases
ProteinModelPortal	B8CCT7.
ModBase	Search...
Protein-protein interaction databases
STRING	35128.JGI42475.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Thaps42475; Thaps42475; Thaps42475.
GeneID	7441832.
KEGG	tps:THAPSDRAFT_42475.
Phylogenomic databases
eggNOG	COG1053.
HOGENOM	HOG000160475.
KO	K00234.
ProtClustDB	PLN00128.
Family and domain databases
Gene3D	1.20.58.100. 1 hit.
InterPro	IPR003953. FAD_bind_dom. IPR003952. FRD_SDH_FAD_BS. IPR015939. Fum_Rdtase/Succ_DH_flav-like_C. IPR011281. Succ_DH_flav_su_fwd. IPR014006. Succ_Dhase_FrdA_Gneg. [Graphical view]
PANTHER	PTHR11632:SF5. PTHR11632:SF5. 1 hit.
Pfam	PF00890. FAD_binding_2. 1 hit. PF02910. Succ_DH_flav_C. 1 hit. [Graphical view]
SUPFAM	SSF46977. Succ_DH_flav_C. 1 hit.
TIGRFAMs	TIGR01816. sdhA_forward. 1 hit. TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITE	PS00504. FRD_SDH_FAD_BINDING. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8CCT7_THAPS

Accession

Primary (citable) accession number: B8CCT7

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	April 3, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)